| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 712543 | 173 (0.850) | 14 (0.070) | 4/148 | NT | 8.0% | intergenic (+22/‑77) | tagG/tarB | Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase |
| ? | USA300TCH1516_ALE | = 712566 | 163 (0.870) | intergenic (+45/‑54) | tagG/tarB | Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase | |||||
TGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/712449‑712543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA < USA300TCH1516_ALE/712566‑712477 TGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAA < 1:3289411/91‑1TGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAA > 1:2535769/1‑91 GTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAAC < 2:226627/91‑1 GTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAAC < 2:1470411/91‑1 GTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAAC < 1:2289115/91‑1 TTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACC < 1:1483378/91‑1 GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC < 1:2877718/91‑1 TGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTT < 1:3351630/91‑1 TGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTT < 2:3690116/91‑1 TGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTT < 1:953820/91‑1 TGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTT < 1:3761507/91‑1 TGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTT < 1:2238392/91‑1 GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGC < 1:2371973/91‑1 GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGC < 1:370531/91‑1 GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGC < 1:3635317/91‑1 GTACGTTCACATGAAATAGAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACGTCCAGTTATTAATGGTTAGC < 2:3854174/91‑1 TACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCG < 1:1915263/91‑1 TACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCG < 2:1015938/91‑1 ACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGG < 1:3227687/91‑1 ACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGG < 1:1372574/91‑1 ACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGG < 2:3050200/91‑1 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGT > 1:3249096/1‑91 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGT > 1:1578733/1‑91 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGT > 2:1810616/1‑91 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGT > 1:471239/1‑91 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGT > 2:1498018/1‑91 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGAAAATTGATCTCTATATTTCATGTGT > 1:3683197/1‑91 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA < 2:1292487/91‑1 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA > 1:1684042/1‑91 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA < 2:215492/91‑1 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA > 1:1976672/1‑91 CCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA < 1:2446617/91‑1 CCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA > 1:3092133/1‑91 CCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA > 1:292234/1‑91 CCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA > 1:3092001/1‑91 CCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA < 1:2446409/91‑1 CCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAG < 2:2183446/91‑1 CCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAG < 2:2557118/91‑1 CCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAG < 2:2671406/91‑1 CCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGT < 2:1496034/91‑1 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA > 1:1691073/1‑91 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA > 1:1691473/1‑91 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA > 1:3696843/1‑91 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA > 1:197559/1‑91 TGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/712449‑712543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA < USA300TCH1516_ALE/712566‑712477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |