BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 712543	173 (0.850)	14 (0.070)	4/148	NT	8.0%	intergenic (+22/‑77)	tagG/tarB	Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase
*	?	USA300TCH1516_ALE	= 712566	163 (0.870)	14 (0.070)	4/148	NT	8.0%	intergenic (+45/‑54)	tagG/tarB	Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase

Only 100 of 251 total aligned reads displayed.

GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTGGTAG  >  USA300TCH1516_ALE/712476‑712656

gTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGt                                                                                            >  2:2344629/1‑91 (MQ=255)

gTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGt                                                                                            <  2:3220144/91‑1 (MQ=255)

 tACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTg                                                                                           >  1:197559‑M2/1‑90 (MQ=255)

 tACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTg                                                                                           >  1:3696843‑M2/1‑90 (MQ=255)

  ttaaaacgttcataatacaccaacttaatatgttatttacttaaattataaacaaaaatgAACCCCGCTAACCATTAATAAATGGAAGTgg                                                                                          >  1:3070286‑M1/61‑91 (MQ=255)

  ttaaaacgttcataatacaccaacttaatatgttagttactaaaattataaacaaaaatgAACCCCGCTAACCATTAATAAATGGAAGTgg                                                                                          >  2:2569807‑M1/61‑91 (MQ=255)

   cTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggg                                                                                         <  2:2183446‑M2/91‑4 (MQ=255)

   cTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggg                                                                                         <  2:2671406‑M2/91‑4 (MQ=255)

      acacATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggggtt                                                                                      >  1:3249096‑M2/1‑85 (MQ=255)

      aacgttcataatacaccaacttaatatgttatttacttaaattataaacaaaaatgAACCCCGCTAACCATTAATAAATGGAAGTGGGGtt                                                                                      >  1:54069‑M1/57‑91 (MQ=255)

      aacgttcataatacaccaacttaatatgttatttacttaaattataaacaaaaatgAACCCCGCTAACCATTAATAAATGGAAGTGGGGtt                                                                                      >  1:1520400‑M1/57‑91 (MQ=255)

       cacaTGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTc                                                                                     <  1:1403178/91‑1 (MQ=255)

             ataatacaccaacttaatatgttatttacttaaattataaacaaaaatgAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCAttttt                                                                               >  1:1226994‑M1/50‑91 (MQ=255)

             aaaTATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCAttttt                                                                               >  2:1322162/1‑91 (MQ=255)

              aaTATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTg                                                                              >  1:2931989/1‑91 (MQ=255)

               atatAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGt                                                                             >  1:470746/1‑91 (MQ=255)

                 ataGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGttt                                                                           >  2:4973/1‑91 (MQ=255)

                 ataGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGttt                                                                           >  2:2607903/1‑91 (MQ=255)

                 ataGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGttt                                                                           <  1:1571914/91‑1 (MQ=255)

                   agagATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTtat                                                                         >  1:1359804/1‑91 (MQ=255)

                     agaTCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATaa                                                                       >  2:2769863/1‑91 (MQ=255)

                     agaTCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATaa                                                                       >  1:3964/1‑91 (MQ=255)

                      gaTCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAAt                                                                      <  1:2233164/91‑1 (MQ=255)

                       aTCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAAtt                                                                     <  2:1797292/91‑1 (MQ=255)

                       aTCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAAtt                                                                     >  2:3038752/1‑91 (MQ=255)

                        tCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAAttt                                                                    >  2:1655210/1‑91 (MQ=255)

                         cAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTa                                                                   <  1:3189546/91‑1 (MQ=255)

                           aTTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAg                                                                 <  2:2462201/91‑1 (MQ=255)

                           aTTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAg                                                                 <  1:3609440/91‑1 (MQ=255)

                           aTTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAg                                                                 >  1:1501980/1‑91 (MQ=255)

                           aTTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAg                                                                 >  1:1751311/1‑91 (MQ=255)

                            tttGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGt                                                                <  1:52127/91‑1 (MQ=255)

                            tttGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGt                                                                <  1:756952/91‑1 (MQ=255)

                                cAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAAt                                                            >  2:836423/1‑91 (MQ=255)

                                  gACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATaa                                                          >  1:1674478/1‑91 (MQ=255)

                                   aCTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAAc                                                         >  2:793975/1‑91 (MQ=255)

                                    tttcttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACa                                                        <  2:461278/90‑1 (MQ=255)

                                     ttcttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACat                                                       <  1:2908172/91‑1 (MQ=255)

                                     ttcttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACat                                                       <  2:3093153/91‑1 (MQ=255)

                                     ttcttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACat                                                       <  1:1986642/91‑1 (MQ=255)

                                      tcttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACata                                                      <  2:2702145/91‑1 (MQ=255)

                                        ttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATAtt                                                    >  1:1490868/1‑91 (MQ=255)

                                        ttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATAtt                                                    >  1:1686072/1‑91 (MQ=255)

                                          gTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTaa                                                  <  1:1452243/91‑1 (MQ=255)

                                          gTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTaa                                                  >  2:3212452/1‑91 (MQ=255)

                                          gTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTaa                                                  >  1:1643165/1‑91 (MQ=255)

                                           tAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAg                                                 <  1:2468402/91‑1 (MQ=255)

                                            aaTATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGt                                                >  1:2978769/1‑91 (MQ=255)

                                               atatTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTgg                                             <  2:2537921/91‑1 (MQ=255)

                                                tatTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGgt                                            >  1:2370442/1‑91 (MQ=255)

                                                tatTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGgt                                            >  1:1701895/1‑91 (MQ=255)

                                                 atTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGgtg                                           <  1:3639959/91‑1 (MQ=255)

                                                  tttATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTTGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGgtgt                                          <  2:3476141/91‑1 (MQ=255)

                                                      tatGACGAAACCCCGCTAACCATTAATAAGTGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGtatta                                      <  1:2186235/91‑1 (MQ=255)

                                                          aCGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTCCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGaa                                  >  2:2736443/1‑91 (MQ=255)

                                                           cGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAAc                                 >  1:356666/1‑91 (MQ=255)

                                                            gAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACg                                <  1:3393571/91‑1 (MQ=255)

                                                            gAAACCCCGCTAACCATTAATAAATGGAAGTGCGGTTCATTTTTGTTTATAATTTAAGT‑AATAACATATTAAGTTGGTGTATTATGAACGt                               >  2:3882281/1‑91 (MQ=255)

                                                              AACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGtt                              >  2:1255929‑M1/1‑91 (MQ=255)

                                                              AACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGtt                              >  2:2857548‑M1/1‑91 (MQ=255)

                                                              AACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGtt                              <  1:2242363‑M1/91‑1 (MQ=255)

                                                               ACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGttt                             <  1:3702534‑M1/91‑1 (MQ=255)

                                                               ACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGttt                             <  1:1774406‑M1/91‑1 (MQ=255)

                                                                CCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGtttt                            <  1:973260‑M1/91‑1 (MQ=255)

                                                                    tcTAACTATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTtaata                        <  2:3811467/90‑1 (MQ=255)

                                                                    gCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTtaata                        <  1:3467768/91‑1 (MQ=255)

                                                                     cTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTtaataa                       <  2:670448/91‑1 (MQ=255)

                                                                      tAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAGTTTAAGTAAATAACATATTAAGTTGGTGTATTATGCACGTTTTACTaaa                      >  2:1301822/1‑91 (MQ=255)

                                                                      tAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGCTTTAATaaa                      >  1:3783136/1‑91 (MQ=255)

                                                                       aaCCATTAATAAATGGAAGTggggtttcgtcatataaatatattacaagaagtctgcaaattgatctctatatttcatgtgtaagtacgca                     <  2:3690116‑M2/91‑72 (MQ=255)

                                                                       aaCCATTAATAAATGGAAGTggggtttcgtcatataaatatattacaagaagtctgcaaattgatctctatatttcatgtgtaagtacgca                     <  1:3761507‑M2/91‑72 (MQ=255)

                                                                       aaCCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAg                     >  1:2094767/1‑91 (MQ=255)

                                                                       aaCCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAg                     <  2:1743198/91‑1 (MQ=255)

                                                                       aaCCATTAATAAATGGAAGTGGGGTTCATTTTTATTTATAATTTAACTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAg                     >  1:3152351/1‑91 (MQ=255)

                                                                        aCCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGa                    <  2:3416319/91‑1 (MQ=255)

                                                                         ccATTAATAACCGGAAGTGGGGTTCATTTTTGGTTCTAATCTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATACAgca                   >  2:2271336/1‑89 (MQ=255)

                                                                          cATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGaaa                  >  2:1878895/1‑91 (MQ=255)

                                                                          cATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGaaa                  >  1:533064/1‑91 (MQ=255)

                                                                           aTTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAAt                 >  1:1653922/1‑91 (MQ=255)

                                                                            ttAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAAtt                <  1:87397/91‑1 (MQ=255)

                                                                              aataaATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAAtttt              <  2:1995715/91‑1 (MQ=255)

                                                                               ataaATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTa             <  2:211860/91‑1 (MQ=255)

                                                                                  aaTGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCa          >  2:2949924/1‑91 (MQ=255)

                                                                                   aTGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCAt         >  2:1461794/1‑91 (MQ=255)

                                                                                    tGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCAtt        <  1:1015135/91‑1 (MQ=255)

                                                                                    tGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCAtt        <  2:1513542/91‑1 (MQ=255)

                                                                                     ggAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCAttt       <  2:1480448/91‑1 (MQ=255)

                                                                                     ggAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCAttt       <  2:1116621/91‑1 (MQ=255)

                                                                                     ggAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCAttt       <  1:606677/91‑1 (MQ=255)

                                                                                     ggAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGGTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCAttt       <  1:3428401/91‑1 (MQ=255)

                                                                                      gAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTg      <  1:1061077/91‑1 (MQ=255)

                                                                                       aaGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTgg     <  2:1121149/91‑1 (MQ=255)

                                                                                       aaGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTgg     <  2:1041836/91‑1 (MQ=255)

                                                                                       aaGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTgg     >  2:3949792/1‑91 (MQ=255)

                                                                                        aGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTGGt    >  1:2396933/1‑91 (MQ=255)

                                                                                        aGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTGGt    >  1:2723681/1‑91 (MQ=255)

                                                                                         gTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTGGTa   >  1:3345409/1‑91 (MQ=255)

                                                                                          tGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTGGTAg  >  1:1861225/1‑91 (MQ=255)

                                                                                          tGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTGGTAg  <  2:1154932/91‑1 (MQ=255)

                                                                                          tGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTGGTAg  >  1:603476/1‑91 (MQ=255)

GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAATAAAGAAATTTTATCATTTGGTAG  >  USA300TCH1516_ALE/712476‑712656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.