| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 715303 = | 160 (0.790) | 14 (0.080) | 9/132 | NT | 9.0% | intergenic (+61/+56) | tarD/dacA | Glycerol‑3‑phosphate cytidylyltransferase/D‑alanyl‑D‑alanine carboxypeptidase DacA |
| ? | USA300TCH1516_ALE | 715350 = | 151 (0.900) | intergenic (+108/+9) | tarD/dacA | Glycerol‑3‑phosphate cytidylyltransferase/D‑alanyl‑D‑alanine carboxypeptidase DacA | |||||
TTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/715405‑715303‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAAT > USA300TCH1516_ALE/715350‑715439 TTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAA > 1:558228/1‑91TTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAA > 1:1815419/1‑91 TATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC < 1:1111001/91‑1 TATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC < 2:1936041/91‑1 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAACACGGGCAAGTTGCACATTATAAAGCTGCGAAACT < 2:2892000/91‑1 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT < 1:3566995/91‑1 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT > 1:3795131/1‑91 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT < 2:512820/91‑1 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT < 2:1735631/91‑1 TTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTT > 2:2177767/1‑91 TTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTT < 1:469494/91‑1 TTGTTCATATGATAATCAATCGTTTATATAGAGAAAGAAAATAAAACATACTAGATACGGTCAAGTTGCACATTATAAAGCTGCGAAACTT < 2:1777492/91‑1 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAACCATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT > 2:3048421/1‑91 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAACCGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT > 2:3909065/1‑91 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT > 1:565005/1‑91 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT > 1:564471/1‑91 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT > 1:2299376/1‑91 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT > 2:1490437/1‑91 GTTCATATGAGAATCAATCGTTTACTTAGAAAAAGAAAATAAAACATACTCAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT < 2:3662714/91‑1 TTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTC > 1:928018/1‑91 TTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTC > 1:3777402/1‑91 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC > 2:2875891/1‑91 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC > 2:1685684/1‑91 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC < 2:815644/91‑1 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC > 1:2122423/1‑91 CATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCG > 2:94586/1‑91 ATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTACAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGT > 2:2254611/1‑91 ATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGT < 2:3391444/91‑1 ATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGT < 1:392421/91‑1 ATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGT > 1:2195260/1‑91 ATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAATTGCACATTATAAAGCTGCGAAACTTGTCCGT > 1:3373226/1‑91 ATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTT > 1:559595/1‑91 ATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTT < 1:1412771/91‑1 ATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTT > 1:978334/1‑91 ATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTT < 2:2455179/91‑1 ATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTT > 1:3698116/1‑91 ATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTT > 1:3698169/1‑91 TGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT < 2:1727458/91‑1 TGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT < 2:662710/91‑1 TGAGAATCAATCGTGTATTTAGAAAAAGAAAATAAAACATACTAAAATCGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT < 2:3382908/91‑1 AAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTA > 1:3866131/1‑91 ATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAA > 1:3353933/1‑91 ACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAAC > 2:2599903/1‑91 AGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAAT > 1:2351841/1‑91 AGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAAT > 1:2352088/1‑91 GTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATA > 2:1387763/1‑91 TTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAA > 2:3371218/1‑91 TGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAG > 2:389385/1‑91 TGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAG > 2:389506/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 1:194243/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 1:3337273/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 1:1702936/1‑91 GCACATTATAAAGCCGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 2:3358355/1‑91 ACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGC > 1:359167/1‑91 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC < 2:1972769/91‑1 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC > 1:1328167/1‑91 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC > 2:2743032/1‑91 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC < 2:2949488/91‑1 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC > 2:779402/1‑91 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC > 2:779652/1‑91 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC < 1:453243/91‑1 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC < 1:454359/91‑1 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC < 2:1762741/91‑1 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC < 2:1762641/91‑1 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC > 1:3168784/1‑91 AACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGC < 1:65556/91‑1 CTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCAT > 1:699029/1‑91 TTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATG < 1:479624/91‑1 TTGACCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATG < 1:3065397/91‑1 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT < 1:3157773/91‑1 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT < 1:3356340/91‑1 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT > 2:2646519/1‑91 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT < 1:1487886/91‑1 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC < 1:908725/91‑1 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC > 2:3604351/1‑91 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC < 2:2089664/91‑1 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC < 1:211419/91‑1 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC < 2:908325/91‑1 CGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCA < 2:1907671/91‑1 CGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCA < 2:2368852/91‑1 CGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCA > 2:1844050/1‑91 TTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACC < 1:3840154/91‑1 TTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACC < 1:3290434/91‑1 TTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACC < 1:2756326/91‑1 TTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACC < 1:1883135/91‑1 TTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCA > 1:850677/1‑91 TTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCA > 2:1828741/1‑91 TTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCA > 2:1828763/1‑91 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA > 1:481445/1‑91 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA < 1:489315/91‑1 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA > 1:1415309/1‑91 TTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAAT < 1:134534/91‑1 TTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/715405‑715303‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAAT > USA300TCH1516_ALE/715350‑715439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |