BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	715303 =	160 (0.790)	14 (0.080)	9/132	NT	9.0%	intergenic (+61/+56)	tarD/dacA	Glycerol‑3‑phosphate cytidylyltransferase/D‑alanyl‑D‑alanine carboxypeptidase DacA
*	?	USA300TCH1516_ALE	715350 =	151 (0.900)	14 (0.080)	9/132	NT	9.0%	intergenic (+108/+9)	tarD/dacA	Glycerol‑3‑phosphate cytidylyltransferase/D‑alanyl‑D‑alanine carboxypeptidase DacA

Only 100 of 275 total aligned reads displayed.

ATACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATG  >  USA300TCH1516_ALE/715260‑715440

aTACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGttttt                                                                                            >  2:1913024/1‑91 (MQ=255)

 tACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTa                                                                                           >  1:331609/1‑91 (MQ=255)

 tACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTa                                                                                           >  2:2320077/1‑91 (MQ=255)

 tACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTa                                                                                           >  2:368697/1‑91 (MQ=255)

 tACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTa                                                                                           <  1:788705/91‑1 (MQ=255)

   cTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGt                                                                                         >  1:2616046/1‑91 (MQ=255)

      aaCGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATg                                                                                      >  1:750582/1‑91 (MQ=255)

       aCGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGt                                                                                     <  1:1910725/91‑1 (MQ=255)

        cGATAAATTAACTTAGGTTATTATAAAATAAATATAACACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGtt                                                                                    >  1:3332479/1‑91 (MQ=255)

        cGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGtt                                                                                    <  1:2762640/91‑1 (MQ=255)

        cGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGtt                                                                                    >  2:3470044/1‑91 (MQ=255)

          aTAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGtttt                                                                                  <  1:2196950/91‑1 (MQ=255)

            tttatttagaaaaagaaaataaaacatactaAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAt                                                                                >  1:3353933‑M1/32‑91 (MQ=255)

             aaTTATCTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAtt                                                                               <  2:3648977/91‑1 (MQ=255)

             aaTTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAtt                                                                               <  2:623291/91‑1 (MQ=255)

             aaTTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAtt                                                                               >  2:2260330/1‑91 (MQ=255)

             aaTTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAtt                                                                               >  1:3133280/1‑91 (MQ=255)

              aTTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttt                                                                              <  1:503009/91‑1 (MQ=255)

              aTTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttt                                                                              <  1:3478184/91‑1 (MQ=255)

              aTTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttt                                                                              <  1:1206437/91‑1 (MQ=255)

              aTTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTATCCCAGCTTTATAATGTGCAACTTGTCCGTAGCTAGTATGTTTTAttt                                                                              >  2:2131266/1‑91 (MQ=255)

               ttAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAtttt                                                                             >  2:454359/1‑91 (MQ=255)

                 aaCTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttct                                                                           >  2:3870961/1‑91 (MQ=255)

                  aCTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttctt                                                                          >  2:2081436/1‑91 (MQ=255)

                   cTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttcttt                                                                         >  2:2710763/1‑91 (MQ=255)

                      aGGTTATTAGAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttctttttc                                                                      <  1:3777938/91‑1 (MQ=255)

                       ggTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttctttttct                                                                     >  2:109519/1‑91 (MQ=255)

                       ggTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttctttttct                                                                     >  1:2731415/1‑91 (MQ=255)

                       ggTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTACTATGTTTTAttttcttttttt                                                                     >  2:2752319/1‑89 (MQ=255)

                        aagaaaataaaacatactaaaaacggacaagttgcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCta                                                                    >  1:3866131‑M2/67‑91 (MQ=255)

                            ttatAAAATAAATATAACACGGACAAGTTTCGCAGCTTTATAATGTGCAAAATGTCCGTATTTAGTATGTTTTATTTTCTTTTTCtaaata                                                                >  2:376695/1‑91 (MQ=255)

                            ttatAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaaata                                                                <  1:33680/91‑1 (MQ=255)

                            ttatAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaaata                                                                >  2:719047/1‑91 (MQ=255)

                            ttatAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaaata                                                                >  2:3129901/1‑91 (MQ=255)

                            ttatAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaaata                                                                <  2:3108400/91‑1 (MQ=255)

                             tataAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaaataa                                                               >  1:109490/1‑91 (MQ=255)

                                  aataaataTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgat                                                          >  1:1764005/1‑91 (MQ=255)

                                   ataaataTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgatt                                                         >  1:3274083/1‑91 (MQ=255)

                                     aaagaTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattga                                                       <  1:3563177/91‑1 (MQ=255)

                                       atatAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattgatt                                                     >  1:3060462/1‑91 (MQ=255)

                                        tataAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTa                                                    >  2:802153/1‑91 (MQ=255)

                                        tataAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTa                                                    <  2:1256396/91‑1 (MQ=255)

                                        tataAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTa                                                    <  1:838200/91‑1 (MQ=255)

                                        tataAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTa                                                    <  1:3705692/91‑1 (MQ=255)

                                         ataAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTAt                                                   <  1:2901611/91‑1 (MQ=255)

                                         ataAAACGGACAAGTTTCGCAGCCTTATAATGTGCAACTTGACCGCTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTAt                                                   >  2:1568489/1‑91 (MQ=255)

                                            AAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCat                                                >  1:3698116‑M1/1‑91 (MQ=255)

                                            AAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCat                                                <  2:2455179‑M1/91‑1 (MQ=255)

                                            AAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCat                                                >  1:978334‑M1/1‑91 (MQ=255)

                                            AAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCat                                                <  1:1412771‑M1/91‑1 (MQ=255)

                                            AAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCat                                                >  1:559595‑M1/1‑91 (MQ=255)

                                              ACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCatat                                              <  1:392421‑M1/91‑1 (MQ=255)

                                              ACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCatat                                              <  2:3391444‑M1/91‑1 (MQ=255)

                                                GGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGa                                            >  1:2122423‑M1/1‑91 (MQ=255)

                                                GGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGa                                            >  2:1685684‑M1/1‑91 (MQ=255)

                                                 GACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGaa                                           >  1:928018‑M1/1‑91 (MQ=255)

                                                  acaagttgcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAAc                                          >  2:2599903‑M2/41‑91 (MQ=255)

                                                  ACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAAc                                          >  2:1490437‑M1/1‑91 (MQ=255)

                                                  ACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAAc                                          >  1:2299376‑M1/1‑91 (MQ=255)

                                                  ACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGGTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAAc                                          >  2:3909065‑M1/1‑91 (MQ=255)

                                                     agttgcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAAt                                       >  1:2352088‑M2/38‑91 (MQ=255)

                                                     AGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAAt                                       <  2:1735631‑M1/91‑1 (MQ=255)

                                                      gttgcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATa                                      >  2:1387763‑M2/37‑91 (MQ=255)

                                                       TTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATaa                                     >  1:1815419‑M1/1‑91 (MQ=255)

                                                         tCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTGAATAAACGATTGATTATCATATGAACAATAAGt                                   <  2:322213/91‑1 (MQ=255)

                                                         tCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGt                                   <  1:1577448/91‑1 (MQ=255)

                                                         tCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGt                                   <  2:870931/91‑1 (MQ=255)

                                                         gcacattataaagccgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGt                                   >  2:3358355‑M2/34‑91 (MQ=255)

                                                          cGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGATCAATAAGTg                                  <  1:1982339/91‑1 (MQ=255)

                                                          cGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTg                                  <  2:1233530/91‑1 (MQ=255)

                                                          cGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTg                                  <  1:3811059/91‑1 (MQ=255)

                                                           gCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGc                                 >  2:3716261/1‑91 (MQ=255)

                                                           acattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGc                                 >  1:359167‑M2/32‑91 (MQ=255)

                                                            cAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCt                                >  2:2168611/1‑91 (MQ=255)

                                                            cAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCt                                >  1:1752949/1‑91 (MQ=255)

                                                             aGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTa                               >  2:3313584/1‑91 (MQ=255)

                                                                tttATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATc                            >  1:1079423/1‑91 (MQ=255)

                                                                   ataATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAg                         <  2:277805/91‑1 (MQ=255)

                                                                     aaTGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCg                       >  2:1307127/1‑91 (MQ=255)

                                                                     aaTGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCg                       <  1:2992630/91‑1 (MQ=255)

                                                                      aTGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGa                      >  1:1024351/1‑91 (MQ=255)

                                                                        gtgCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACa                    >  1:3416281/1‑91 (MQ=255)

                                                                           cAACTTGTCCGTTTTTAGTATGTTTTAGTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAgg                 <  2:1804717/91‑1 (MQ=255)

                                                                            aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGc                <  2:2949488‑M2/77‑1 (MQ=255)

                                                                            aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGc                <  2:1972769‑M2/77‑1 (MQ=255)

                                                                            aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGc                >  1:1328167‑M2/15‑91 (MQ=255)

                                                                            aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGc                >  2:779402‑M2/15‑91 (MQ=255)

                                                                            aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGc                <  2:1762641‑M2/77‑1 (MQ=255)

                                                                            aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGc                <  1:65556‑M2/77‑1 (MQ=255)

                                                                            aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGc                <  1:453243‑M2/77‑1 (MQ=255)

                                                                               ttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATg             <  1:479624‑M2/80‑1 (MQ=255)

                                                                                tgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGt            <  1:3157773‑M2/81‑1 (MQ=255)

                                                                                tgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGt            <  1:1487886‑M2/81‑1 (MQ=255)

                                                                                tgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGt            >  2:2646519‑M2/11‑91 (MQ=255)

                                                                                  tccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTac          >  2:3604351‑M2/9‑91 (MQ=255)

                                                                                  tccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTac          <  2:908325‑M2/83‑1 (MQ=255)

                                                                                    cgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTacca        <  2:1907671‑M2/85‑1 (MQ=255)

                                                                                      ttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTaccacc      <  1:2756326‑M2/87‑1 (MQ=255)

                                                                                       tttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAccacca     >  2:1828763‑M2/4‑91 (MQ=255)

                                                                                          tAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATg  <  1:2048281/91‑1 (MQ=255)

ATACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATG  >  USA300TCH1516_ALE/715260‑715440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.