| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 761262 | 217 (1.070) | 13 (0.070) | 6/148 | NT | 5.9% | coding (440/927 nt) | yciC_2 | Putative metal chaperone YciC |
| ? | USA300TCH1516_ALE | = 761280 | 215 (1.140) | coding (458/927 nt) | yciC_2 | Putative metal chaperone YciC | |||||
GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/761167‑761262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttcAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC < USA300TCH1516_ALE/761280‑761191 GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACA < 2:2542683/91‑1GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACA > 1:3255045/1‑91GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACA > 1:2389309/1‑91GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACA > 1:2389377/1‑91 CAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAG > 1:468668/1‑91 AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT > 1:2556181/1‑91 AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT < 1:2417671/91‑1 AATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACTGAAAATACAGTT < 1:3032364/91‑1 AATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTT > 1:1257491/1‑91 AATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTT > 1:2838753/1‑91 AATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTT < 1:3032322/91‑1 ATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTT < 1:2539742/91‑1 ATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTT < 2:3810162/91‑1 ATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTT < 1:3788155/91‑1 ATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTT < 1:2830603/91‑1 ATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTT > 2:1134121/1‑91 AAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAG < 1:876599/91‑1 CGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAA < 1:1779748/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 1:2623268/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 2:2352720/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 2:2351807/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 2:2319897/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 2:2275546/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGACTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 2:2026097/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGA‑‑‑TTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACTG < 2:3396824/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGA‑‑‑TTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACTG < 2:349481/91‑1 ATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAAC < 2:2994170/91‑1 ATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAAC < 1:928153/91‑1 TTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACT < 1:2318834/91‑1 AGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCTTCTAATACACCATAAATAA > 2:2634248/1‑91 AGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAA < 2:2768225/91‑1 AGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAA > 1:199013/1‑91 AGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAA > 1:776937/1‑91 AGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAA > 2:2632488/1‑91 AGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAA > 1:424673/1‑91 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT < 2:2878907/91‑1 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT < 2:3578/91‑1 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT < 1:796809/91‑1 TTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATC > 1:2609758/1‑91 TTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATC < 2:99077/91‑1 TTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGCCGCATCTAATACACCATAAATAATC > 1:2313266/1‑91 TCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGG > 2:2147605/1‑91 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC < 1:970805/91‑1 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 1:7233/1‑91 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 2:3466000/1‑91 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 2:3466410/1‑91 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 1:2413902/1‑91 CAACTGATCTTCAATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 1:3030775/1‑91 GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/761167‑761262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttcAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC < USA300TCH1516_ALE/761280‑761191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |