BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 761262	217 (1.070)	13 (0.070)	6/148	NT	5.9%	coding (440/927 nt)	yciC_2	Putative metal chaperone YciC
*	?	USA300TCH1516_ALE	= 761280	215 (1.140)	13 (0.070)	6/148	NT	5.9%	coding (458/927 nt)	yciC_2	Putative metal chaperone YciC

Only 100 of 300 total aligned reads displayed.

GTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAA  >  USA300TCH1516_ALE/761174‑761352

gTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGACGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGc                                                                                          >  1:3433092/1‑91 (MQ=255)

  tAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATGTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTg                                                                                        <  2:3249822/91‑1 (MQ=255)

      ttCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATgg                                                                                    <  1:3725197/91‑1 (MQ=255)

          ttGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGa                                                                                >  1:2271365/1‑91 (MQ=255)

           tGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGAt                                                                               <  2:328331/91‑1 (MQ=255)

           tGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGAt                                                                               >  2:164479/1‑91 (MQ=255)

           tGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGAt                                                                               <  1:711591/91‑1 (MQ=255)

           tGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGAt                                                                               <  1:3446529/91‑1 (MQ=255)

            gAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATc                                                                              >  2:198414/1‑91 (MQ=255)

            gAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATc                                                                              >  1:1786165/1‑91 (MQ=255)

              aaaGCCGATTATTTATGGTGTATTAGATGTGGCTCGATTTTTAGAACGTCATCCATATACCGAAAATACAGTTTCGCTGATGGAAGATCAg                                                                            <  1:3164408/91‑1 (MQ=255)

               aaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcag                                                                           <  1:876599‑M1/91‑18 (MQ=255)

               aaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGt                                                                           <  2:1079717/91‑1 (MQ=255)

                 gCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTg                                                                         >  2:3466410‑M2/1‑90 (MQ=255)

                  ccGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTga                                                                        >  2:2147605‑M2/1‑89 (MQ=255)

                    gATTATTTATGGTGTATTAGATGCGGCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaa                                                                      >  1:2313266‑M2/1‑87 (MQ=255)

                    gATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaa                                                                      <  2:2351807‑M1/91‑23 (MQ=255)

                    gATTATTTATGGTGTATTAGATGCGACTCGA‑‑‑TTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaactg                                                                   <  2:3396824‑M1/91‑26 (MQ=255)

                     attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaac                                                                     <  1:796809‑M2/91‑6 (MQ=255)

                      ttatttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaact                                                                    <  2:2768225‑M2/91‑7 (MQ=255)

                      ttatttatGGTGTATTAGAAGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaact                                                                    >  2:2634248‑M2/1‑85 (MQ=255)

                         tttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAg                                                                 >  2:2248252/1‑91 (MQ=255)

                          ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                <  2:1794666/91‑1 (MQ=255)

                          ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                <  2:3701701/91‑1 (MQ=255)

                          ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                >  1:3214612/1‑91 (MQ=255)

                            atGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGa                                                              <  2:3540826/91‑1 (MQ=255)

                             tGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGAc                                                             <  2:2461254/91‑1 (MQ=255)

                             tGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGAc                                                             <  1:3270812/91‑1 (MQ=255)

                             tGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGAc                                                             >  2:495013/1‑91 (MQ=255)

                               gtgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACAt                                                           <  2:1682851/91‑1 (MQ=255)

                               gtgtATGAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACAt                                                           <  1:1881929/91‑1 (MQ=255)

                                tgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATg                                                          <  1:2471622/91‑1 (MQ=255)

                                tgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATg                                                          <  1:1449358/91‑1 (MQ=255)

                                 gtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGa                                                         >  1:1499487/1‑91 (MQ=255)

                                  taatAGATGCTCCACAATTATTAGAACAACATCAATATACCGAAAAAACAGCGTCTCTAATGGAAGATCAGTTCAAACTAAGTGACATGat                                                        <  2:967944/88‑1 (MQ=255)

                                   aTTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGatt                                                       >  1:2675671/1‑91 (MQ=255)

                                     tAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattat                                                     >  2:3625257/1‑91 (MQ=255)

                                       gATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAGCTAAGTGACATGattatta                                                   >  1:2915722/1‑91 (MQ=255)

                                       gATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattatta                                                   <  2:540377/91‑1 (MQ=255)

                                        aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattat                                                  >  1:2081958/1‑91 (MQ=255)

                                        aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattat                                                  >  2:3022394/1‑91 (MQ=255)

                                         tGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattatt                                                 <  1:2200495/91‑1 (MQ=255)

                                         tGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattatt                                                 <  1:3842248/91‑1 (MQ=255)

                                         tGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattatt                                                 <  1:235051/91‑1 (MQ=255)

                                          gCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGAttattatta                                                >  1:1191166/1‑91 (MQ=255)

                                           cGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaa                                               <  1:3356784/91‑1 (MQ=255)

                                             aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                             >  1:2689749/1‑91 (MQ=255)

                                                cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                          >  1:2033284/1‑91 (MQ=255)

                                                cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                          >  1:2961587/1‑91 (MQ=255)

                                                 gATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAAt                                         >  1:512441/1‑91 (MQ=255)

                                                  aTTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGAGGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAAtt                                        <  1:3132463/91‑1 (MQ=255)

                                                    ttttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGa                                      <  1:2792575/91‑1 (MQ=255)

                                                     tttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGAt                                     >  2:1177297/1‑91 (MQ=255)

                                                     tttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGAt                                     >  1:1812774/1‑91 (MQ=255)

                                                     tttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGAt                                     >  2:2734978/1‑91 (MQ=255)

                                                      ttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATc                                    >  1:2410478/1‑91 (MQ=255)

                                                       tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                   <  2:2614556/91‑1 (MQ=255)

                                                       tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                   <  2:3108757/91‑1 (MQ=255)

                                                       tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                   <  1:2179213/91‑1 (MQ=255)

                                                        aGACCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAACTGATCtt                                  >  2:3504383/1‑91 (MQ=255)

                                                        aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTACTAAAATTGATCtt                                  >  1:488822/1‑91 (MQ=255)

                                                        aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                  <  2:395342/91‑1 (MQ=255)

                                                         gAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTta                                 <  2:1495812/91‑1 (MQ=255)

                                                           aCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtata                               >  2:2974142/1‑91 (MQ=255)

                                                             gTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAAc                             >  1:2132146/1‑91 (MQ=255)

                                                                atcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtga                          <  2:1363645/91‑1 (MQ=255)

                                                                   aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                       <  1:1929381/91‑1 (MQ=255)

                                                                   aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                       <  1:747864/91‑1 (MQ=255)

                                                                   aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                       <  1:2570842/91‑1 (MQ=255)

                                                                    atatACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGAc                      >  1:3580086/1‑91 (MQ=255)

                                                                      ataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAg                    >  1:1044618/1‑91 (MQ=255)

                                                                      ataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTGGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAg                    <  2:58075/91‑1 (MQ=255)

                                                                        aCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTc                  >  1:2050538/1‑91 (MQ=255)

                                                                         ccGAAAATACGGTTTCGCTGATGGAAGAGCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTcg                 <  2:2408652/91‑2 (MQ=255)

                                                                          cGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCtt                <  1:3887087/91‑1 (MQ=255)

                                                                          cGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCtt                <  1:3313270/91‑1 (MQ=255)

                                                                           gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg               <  2:2037325/91‑1 (MQ=255)

                                                                             aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag             <  2:1202093/91‑1 (MQ=255)

                                                                             aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag             <  1:3478665/91‑1 (MQ=255)

                                                                               atccAGATTCGCTGATGGAAGATCAGTTGAAACTAAGCGACAAGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaa           >  2:1742913/4‑91 (MQ=255)

                                                                               aTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaa           <  1:1681779/91‑1 (MQ=255)

                                                                               aTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaa           <  2:3807168/91‑1 (MQ=255)

                                                                                 aCAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaaa         <  1:450166/91‑1 (MQ=255)

                                                                                 aCAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaaa         <  2:728779/91‑1 (MQ=255)

                                                                                   aGTTTCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataa       >  1:776937‑M1/1‑6 (MQ=255)

                                                                                   aGTTTCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataa       >  2:2632488‑M1/1‑6 (MQ=255)

                                                                                   aGTTTCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataa       >  1:199013‑M1/1‑6 (MQ=255)

                                                                                    gTTTCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat      <  2:2878907‑M1/91‑87 (MQ=255)

                                                                                    gTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat      <  1:928153‑M2/91‑69 (MQ=255)

                                                                                    gTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTg      <  2:227327/91‑1 (MQ=255)

                                                                                     tttCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     >  1:2609758‑M1/1‑4 (MQ=255)

                                                                                     tttCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     <  2:99077‑M1/91‑88 (MQ=255)

                                                                                     tttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     <  2:2352720‑M2/91‑70 (MQ=255)

                                                                                     tttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     <  2:2275546‑M2/91‑70 (MQ=255)

                                                                                     tttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     <  1:2623268‑M2/91‑70 (MQ=255)

                                                                                     tttCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGa     >  1:3584955/1‑91 (MQ=255)

                                                                                       tCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATa   <  1:979988/91‑1 (MQ=255)

                                                                                       tCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATa   <  1:1379459/91‑1 (MQ=255)

                                                                                        caactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcggc  >  2:3466000‑M1/1‑1 (MQ=255)

                                                                                        caactgatcttcaatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcggc  >  1:3030775‑M1/1‑1 (MQ=255)

GTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAA  >  USA300TCH1516_ALE/761174‑761352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.