BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 761262	217 (1.070)	13 (0.070)	6/148	NT	5.9%	coding (440/927 nt)	yciC_2	Putative metal chaperone YciC
*	?	USA300TCH1516_ALE	= 761280	215 (1.140)	13 (0.070)	6/148	NT	5.9%	coding (458/927 nt)	yciC_2	Putative metal chaperone YciC

Only 100 of 282 total aligned reads displayed.

AGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGATTTG  >  USA300TCH1516_ALE/761190‑761370

aGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGtt                                                                                            <  2:32242/91‑1 (MQ=255)

 gCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATTGAAGATCAGTTg                                                                                           >  1:3030775‑M2/1‑90 (MQ=255)

 gCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTg                                                                                           <  1:970805‑M2/91‑2 (MQ=255)

 gCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTg                                                                                           >  2:3466410‑M2/1‑90 (MQ=255)

    gATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaa                                                                                        >  1:2609758‑M2/1‑87 (MQ=255)

     attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaac                                                                                       <  1:796809‑M2/91‑6 (MQ=255)

      ttatttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaact                                                                                      >  1:199013‑M2/1‑85 (MQ=255)

      ttatttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaact                                                                                      >  1:424673‑M2/1‑85 (MQ=255)

      ttatttatGGTGTATTAGAAGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaact                                                                                      >  2:2634248‑M2/1‑85 (MQ=255)

       tatttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTa                                                                                     >  2:1684236/1‑91 (MQ=255)

        atttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTaa                                                                                    <  1:3803506/91‑1 (MQ=255)

        atttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGATGATGGAAGATCAGTTGAAACTaa                                                                                    >  2:3680392/1‑91 (MQ=255)

         tttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAg                                                                                   >  2:2247684/1‑91 (MQ=255)

         tttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCAGCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAg                                                                                   <  2:3957466/91‑1 (MQ=255)

          ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                                  <  2:1794666/91‑1 (MQ=255)

          ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                                  <  2:3701701/91‑1 (MQ=255)

            atGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGa                                                                                <  2:3540826/91‑1 (MQ=255)

             tGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGAc                                                                               >  2:495013/1‑91 (MQ=255)

                tgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATg                                                                            <  2:144241/91‑1 (MQ=255)

                tgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATg                                                                            <  1:2471622/91‑1 (MQ=255)

                  taatAGATGCTCCACAATTATTAGAACAACATCAATATACCGAAAAAACAGCGTCTCTAATGGAAGATCAGTTCAAACTAAGTGACATGat                                                                          <  2:967944/88‑1 (MQ=255)

                       gATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattatta                                                                     <  2:540377/91‑1 (MQ=255)

                        aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattat                                                                    <  2:2853408/91‑1 (MQ=255)

                        aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattat                                                                    <  2:3301349/91‑1 (MQ=255)

                         tGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattatt                                                                   >  2:1743177/1‑91 (MQ=255)

                         tGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattattatt                                                                   <  1:235051/91‑1 (MQ=255)

                           cGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaa                                                                 <  1:3356784/91‑1 (MQ=255)

                           cGACTCGATTTTTAGAACGGCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaa                                                                 <  2:3825/91‑1 (MQ=255)

                             aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                                               <  1:2218009/91‑1 (MQ=255)

                             aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                                               >  1:753677/1‑91 (MQ=255)

                             aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                                               >  2:2690612/1‑91 (MQ=255)

                                cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                                            >  1:2961587/1‑91 (MQ=255)

                                cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                                            >  1:2033681/1‑91 (MQ=255)

                                cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                                            >  2:2444161/1‑91 (MQ=255)

                                 gATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAAt                                                           >  1:2687931/1‑91 (MQ=255)

                                 gATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAAt                                                           >  1:512441/1‑91 (MQ=255)

                                 gATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAAt                                                           <  1:2568883/91‑1 (MQ=255)

                                 gATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAAt                                                           >  1:2291596/1‑91 (MQ=255)

                                  aTTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGAGGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAAtt                                                          <  1:3132463/91‑1 (MQ=255)

                                   tttttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTg                                                         >  2:982333/1‑91 (MQ=255)

                                     tttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGAt                                                       >  2:1177297/1‑91 (MQ=255)

                                      ttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATc                                                      >  2:2072484/1‑91 (MQ=255)

                                       tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                                     <  2:2614587/91‑1 (MQ=255)

                                       tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                                     <  2:3108757/91‑1 (MQ=255)

                                       tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                                     <  1:263511/91‑1 (MQ=255)

                                       tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                                     <  1:2179689/91‑1 (MQ=255)

                                       tAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                                     <  1:2178136/91‑1 (MQ=255)

                                       tAGAACGTCATCAATATACCGAAAATACACTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCt                                                     <  1:3173809/91‑1 (MQ=255)

                                        aGACCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAACTGATCtt                                                    >  2:3504383/1‑91 (MQ=255)

                                        aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTACTAAAATTGATCtt                                                    >  1:488822/1‑91 (MQ=255)

                                        aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                                    <  1:909604/91‑1 (MQ=255)

                                        aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                                    >  1:2122787/1‑91 (MQ=255)

                                        aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                                    <  1:2810352/91‑1 (MQ=255)

                                        aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                                    >  1:3216822/1‑91 (MQ=255)

                                          aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                                  >  1:1805043/1‑91 (MQ=255)

                                           ttttcatcaATAAACCGAAAATACAGTCTCGCTAATGGAAGATCAGTTGAAACTAAGTGCCATGACTATTATTAATAAAATTGATCTtata                                                 >  2:2974050/4‑91 (MQ=255)

                                            cGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATaa                                                <  1:1149064/91‑1 (MQ=255)

                                            cGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATaa                                                >  1:3285921/1‑91 (MQ=255)

                                            cGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATaa                                                <  2:1648633/91‑1 (MQ=255)

                                            cGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATaa                                                >  2:1203006/1‑91 (MQ=255)

                                              ccatcaATCTCCCGAAAATACAGCTTCGCTGCCCGAAGATCAGCCGAAACCCAGTGACATGATTATTACTCATAACACTGACCCTATAAcc                                              >  2:1043498/2‑90 (MQ=255)

                                                 tcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgat                                           >  2:2760004/1‑91 (MQ=255)

                                                 tcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgat                                           <  1:2957823/91‑1 (MQ=255)

                                                 acaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGGCATGATTATTATTAATAAAATTGATCTTATAACtgat                                           <  2:147642/90‑1 (MQ=255)

                                                  caATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatg                                          <  1:3502312/91‑1 (MQ=255)

                                                   aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                                         <  2:912787/91‑1 (MQ=255)

                                                   aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                                         <  1:1929322/91‑1 (MQ=255)

                                                    atatACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGAc                                        >  1:3580128/1‑91 (MQ=255)

                                                    atatACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGAc                                        >  1:2379338/1‑91 (MQ=255)

                                                     tataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACa                                       <  2:2282196/91‑1 (MQ=255)

                                                      ataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAg                                      >  1:1044618/1‑91 (MQ=255)

                                                      ataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTGGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAg                                      <  2:58075/91‑1 (MQ=255)

                                                         ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                   <  1:146160/91‑1 (MQ=255)

                                                         ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                   >  1:2058090/1‑91 (MQ=255)

                                                         ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                   >  1:3656396/1‑91 (MQ=255)

                                                         ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                   >  1:3739736/1‑91 (MQ=255)

                                                          cGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCtt                                  <  1:3886693/91‑1 (MQ=255)

                                                          cGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCtt                                  <  1:3313270/91‑1 (MQ=255)

                                                           gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg                                 <  2:2803199/91‑1 (MQ=255)

                                                             aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag                               <  1:1839751/91‑1 (MQ=255)

                                                                tACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaa                            >  1:469854/1‑91 (MQ=255)

                                                                 aCAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaaa                           <  2:728779/91‑1 (MQ=255)

                                                                  cAGTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaatcgagtcgcatctaatacaccataaataatc                          <  2:3396824‑M2/91‑67 (MQ=255)

                                                                    gTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTg                        <  2:227327/91‑1 (MQ=255)

                                                                     tttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc                       <  2:2352720‑M2/91‑70 (MQ=255)

                                                                     tttCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGa                       <  2:2544216/91‑1 (MQ=255)

                                                                      ttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcg                      <  1:1779748‑M2/91‑71 (MQ=255)

                                                                       tCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATa                     <  1:1379608/91‑1 (MQ=255)

                                                                           tGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCa                 <  1:2661676/91‑1 (MQ=255)

                                                                              tGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAAtt              <  2:1465226/91‑1 (MQ=255)

                                                                                  aGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGt          >  1:126317/1‑91 (MQ=255)

                                                                                   gATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTa         <  2:378946/91‑1 (MQ=255)

                                                                                   gATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTa         <  1:646635/91‑1 (MQ=255)

                                                                                    aTCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTAt        >  2:1435931/1‑91 (MQ=255)

                                                                                      cAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGa      >  2:2557169/1‑91 (MQ=255)

                                                                                       aGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGAt     >  2:2386546/1‑91 (MQ=255)

                                                                                       aGTTGAAACTAAGTGACATGATCATTATTAATAAAATTGATCTTATAACAGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGAt     <  2:3005592/91‑1 (MQ=255)

                                                                                        gTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGAtt    >  1:1632907/1‑91 (MQ=255)

                                                                                         ttGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGAttt   >  2:1953957/1‑91 (MQ=255)

                                                                                          tGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGATTtg  >  1:3475932/1‑91 (MQ=255)

AGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGATTTG  >  USA300TCH1516_ALE/761190‑761370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.