| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 763745 = | 173 (0.850) | 26 (0.140) | 10/148 | NT | 14.5% | coding (381/1554 nt) | ybhI | Inner membrane protein YbhI |
| ? | USA300TCH1516_ALE | 763773 = | 146 (0.780) | coding (409/1554 nt) | ybhI | Inner membrane protein YbhI | |||||
AACACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/763840‑763745‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACT > USA300TCH1516_ALE/763773‑763862 AACACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAG > 2:1289777/1‑91AACACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAG > 1:2509254/1‑91AACACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAG < 2:2980077/91‑1AACACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAG > 2:2661766/1‑91 ACACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGT < 2:57665/91‑1 ACACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGT > 2:1465868/1‑91 CACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTT > 1:1153066/1‑91 ACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTTG > 1:3181513/1‑91 ACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTTG < 1:2426097/91‑1 CTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTTGC < 1:3571675/91‑1 CTAAAAGAGCTAGGCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTTGC < 2:757675/91‑1 TAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTTGCA > 2:159621/1‑91 GCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATA > 1:1255700/1‑91 AGCTGCAACGAGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTT > 2:3463203/1‑91 CAACGAGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTATTAGT > 2:3195681/1‑91 AACGAGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTG > 2:1679300/1‑91 AACGAGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTG > 1:2240502/1‑91 GAGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTA > 1:2117161/1‑91 GAGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTA > 2:2999033/1‑91 GAGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTA > 2:1292618/1‑91 AGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTTGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTAT > 2:766508/1‑91 AGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTCGTGTTAT > 2:1508303/1‑91 AGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTAT > 1:1168657/1‑91 AGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTAT > 2:3844475/1‑91 AGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTAT > 2:1991391/1‑91 AGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTAT > 1:2949028/1‑91 AGAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTAT > 1:3021409/1‑91 GAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATC > 1:1080378/1‑91 GAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATC > 2:2043684/1‑91 GAGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATC > 1:953447/1‑91 AGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATTAAAGACTAGCTCTTTTAGTGTTATCA > 2:119501/1‑91 AGCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCA > 1:1412870/1‑91 GCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAA > 2:513507/1‑91 GCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAA > 1:3878584/1‑91 GCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAA > 2:2885720/1‑91 GCTACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAA > 1:1868218/1‑91 ACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTG > 1:1492462/1‑91 ACAGCTGAAGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTG > 1:1492392/1‑91 GTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATA < 1:1224276/91‑1 TTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCCTAAAAGACTCGCTCTTTTAGCGTTCTCAATTGTTGGTACTAA > 1:3270039/1‑91 TTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAA > 2:1741228/1‑91 TTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAA > 2:2186254/1‑91 TGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGTATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAA > 1:2540041/1‑91 TGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAA < 1:1908188/91‑1 CAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAAC < 2:2860867/91‑1 CAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTCTTAGTGTTATCAATTGTTGGTACTAAAAC > 2:1759327/1‑91 CAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCCCTTTTAGTGTTATCCATTGTTGGTAATAAAAC > 1:3385174/1‑91 AGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACT > 1:730566/1‑91 AGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACT > 1:2153991/1‑91 AGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACT > 1:2154722/1‑91 AGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACT > 1:99926/1‑91 AACACTAAAAGAGCTAGTCTTTTATGCAAATTCGTTTCTTGCATAGCAGCAGCCAAAAATAATGCAGCTGCAACGAGAGCTACAGCTGAAGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/763840‑763745‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGACTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACT > USA300TCH1516_ALE/763773‑763862 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |