BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	763745 =	173 (0.850)	26 (0.140)	10/148	NT	14.5%	coding (381/1554 nt)	ybhI	Inner membrane protein YbhI
*	?	USA300TCH1516_ALE	763773 =	146 (0.780)	26 (0.140)	10/148	NT	14.5%	coding (409/1554 nt)	ybhI	Inner membrane protein YbhI

Only 100 of 243 total aligned reads displayed.

GCTAGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTA  >  USA300TCH1516_ALE/763655‑763835

agttttattaccaacaattgataacactaaaagagctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagct                                                                                             >  1:2153991‑M1/91‑91 (MQ=255)

 gttttattaccaacaatggataacactaaaagggctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTg                                                                                            >  1:3385174‑M1/90‑91 (MQ=255)

 gttttagtaccaacaattgataacactaagagagctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTg                                                                                            >  2:1759327‑M1/90‑91 (MQ=255)

 cTAGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTg                                                                                            <  1:2165928/91‑1 (MQ=255)

 cTAGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTg                                                                                            <  2:3584209/91‑1 (MQ=255)

 cTAGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTg                                                                                            >  2:2751179/1‑91 (MQ=255)

 cTAGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTg                                                                                            <  2:2874581/91‑1 (MQ=255)

  tAGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGc                                                                                           <  1:873049/91‑1 (MQ=255)

   aGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCa                                                                                          >  2:3727056/1‑91 (MQ=255)

   aGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCa                                                                                          <  2:1795/91‑1 (MQ=255)

    ggTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCaa                                                                                         >  2:3103923/1‑91 (MQ=255)

      tAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACt                                                                                       <  1:3890438/91‑1 (MQ=255)

       aaTCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACtt                                                                                      >  1:3933342/1‑91 (MQ=255)

         tCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCa                                                                                    >  2:2602301/1‑91 (MQ=255)

         tCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCa                                                                                    >  1:3283976/1‑91 (MQ=255)

         tCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCa                                                                                    >  1:2982615/1‑91 (MQ=255)

           cGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGc                                                                                  >  1:656428/1‑91 (MQ=255)

            gAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCt                                                                                 >  2:2249080/1‑91 (MQ=255)

              caattgataacactaaaagagctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTGCAACTTCAGCTGt                                                                               >  1:1492462‑M1/77‑91 (MQ=255)

              aaaGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGt                                                                               >  2:935844/1‑91 (MQ=255)

              aaaGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGt                                                                               <  1:1444827/91‑1 (MQ=255)

                aGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAg                                                                             <  1:1625496/91‑1 (MQ=255)

                 ttgataacactaaaagagctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTGCAACTTCAGCTGTAGc                                                                            >  2:2885720‑M1/74‑91 (MQ=255)

                 gTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGc                                                                            <  2:1399860/91‑1 (MQ=255)

                   gataacactaaaagagctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTGCAACTTCAGCTGTAGctc                                                                          >  1:1080378‑M1/72‑91 (MQ=255)

                   gataacactaaaagagctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTGCAACTTCAGCTGTAGctc                                                                          >  2:2043684‑M1/72‑91 (MQ=255)

                    gCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGctct                                                                         >  2:815453/1‑91 (MQ=255)

                    gCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGctct                                                                         >  1:3521540/1‑91 (MQ=255)

                    ataacactaaaagagctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTGCAACTTCAGCTGTAGctct                                                                         >  1:1168657‑M1/71‑91 (MQ=255)

                    ataacactaaaagagctagtcttttatgcaaattcgtttcttgcatagcagcagcaaaaaataatgcagcTGCAACTTCAGCTGTAGctct                                                                         >  2:766508‑M1/71‑91 (MQ=255)

                     cAGTGCTATTTTAGCTCGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCtctc                                                                        <  2:3033472/91‑1 (MQ=255)

                       gTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGt                                                                      <  2:173793/91‑1 (MQ=255)

                       gTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGt                                                                      <  2:439861/91‑1 (MQ=255)

                       gTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGt                                                                      <  1:1128554/91‑1 (MQ=255)

                         gCTATGTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCTTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTg                                                                    <  1:3678654/91‑1 (MQ=255)

                             ttttAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGc                                                                >  2:582039/1‑91 (MQ=255)

                              tttAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCt                                                               <  1:1423650/91‑1 (MQ=255)

                               ttAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTg                                                              <  1:839870/91‑1 (MQ=255)

                               ttAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTg                                                              >  1:2629088/1‑91 (MQ=255)

                                tAGCTGGTAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGc                                                             <  1:1970472/91‑1 (MQ=255)

                                tAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGc                                                             <  2:2558738/91‑1 (MQ=255)

                                tAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGc                                                             <  1:2457924/91‑1 (MQ=255)

                                tAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGc                                                             <  1:3690085/91‑1 (MQ=255)

                                 aGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCa                                                            <  1:2825264/91‑1 (MQ=255)

                                 aGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCa                                                            >  2:162702/1‑91 (MQ=255)

                                   cTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCatt                                                          <  2:3716692/91‑1 (MQ=255)

                                     ggAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCattat                                                        <  2:34336/91‑1 (MQ=255)

                                     ggAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTGTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCattat                                                        <  1:3948524/91‑1 (MQ=255)

                                      gAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCattatt                                                       >  1:2576880/1‑91 (MQ=255)

                                        aGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTAtttt                                                     <  2:1509507/91‑1 (MQ=255)

                                          tGACCTTCTAGTAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTg                                                   <  1:3576774/91‑1 (MQ=255)

                                          tGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTg                                                   >  2:110272/1‑91 (MQ=255)

                                            tatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgc                                                 >  1:1255700‑M1/47‑91 (MQ=255)

                                            aCCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgc                                                 >  1:2266000/1‑91 (MQ=255)

                                            aCCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgc                                                 <  2:1274418/91‑1 (MQ=255)

                                              cTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgctg                                               >  1:190641/1‑91 (MQ=255)

                                               ttCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgctgc                                              >  1:1673490/1‑91 (MQ=255)

                                               ttCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgctgc                                              >  2:337872/1‑91 (MQ=255)

                                                tCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgctgct                                             <  2:3195144/91‑1 (MQ=255)

                                                tCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgctgct                                             >  2:2336856/1‑91 (MQ=255)

                                                  tAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgctgctgc                                           <  1:1144635/91‑1 (MQ=255)

                                                    ggAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTa                                         <  1:576610/91‑1 (MQ=255)

                                                    ggAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTa                                         <  1:3741753/91‑1 (MQ=255)

                                                    ggAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTa                                         >  1:2083186/1‑91 (MQ=255)

                                                    ggAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTa                                         <  1:3662431/91‑1 (MQ=255)

                                                       aCTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGc                                      >  1:1337773/1‑91 (MQ=255)

                                                       aCTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGc                                      <  1:1221950/91‑1 (MQ=255)

                                                            tCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaa                                 <  2:1408977/91‑1 (MQ=255)

                                                            tCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaa                                 <  2:1296167/91‑1 (MQ=255)

                                                              aTGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAAc                               >  1:178558/1‑91 (MQ=255)

                                                              aTGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAAc                               >  1:3012173/1‑91 (MQ=255)

                                                                gCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGa                             <  2:2934804/91‑1 (MQ=255)

                                                                gCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGa                             <  1:3504485/91‑1 (MQ=255)

                                                                 cATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGaa                            <  1:2327814/91‑1 (MQ=255)

                                                                  aTTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCTTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGact                           >  2:749686/1‑89 (MQ=255)

                                                                   ttATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAAtt                          <  1:180474/91‑1 (MQ=255)

                                                                   ttATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAAtt                          <  2:3196655/91‑1 (MQ=255)

                                                                   ttATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAAtt                          <  2:1873509/91‑1 (MQ=255)

                                                                   ttATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAAtt                          <  1:2104925/91‑1 (MQ=255)

                                                                    tATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAAttt                         >  2:2273009/1‑91 (MQ=255)

                                                                    tATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAAttt                         >  1:2934026/1‑91 (MQ=255)

                                                                     aTCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTg                        <  1:3870409/91‑1 (MQ=255)

                                                                           aGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATaaa                  <  1:381506/91‑1 (MQ=255)

                                                                           aGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATaaa                  >  1:3100153/1‑91 (MQ=255)

                                                                               tttAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑c             >  2:689178/1‑91 (MQ=255)

                                                                               gttAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTGGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑c             <  2:3928795/90‑1 (MQ=255)

                                                                                ttAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGCAACGAATTTGCATAAAAGA‑Ct            >  2:3547629/1‑91 (MQ=255)

                                                                                 tAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTa           <  2:1007830/91‑1 (MQ=255)

                                                                                  aGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAg          >  2:2727848/1‑91 (MQ=255)

                                                                                   gTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGc         >  2:2197242/1‑91 (MQ=255)

                                                                                   gTGGATTTGCAACTTCAGCTGTAGCGCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGc         <  2:3239610/91‑1 (MQ=255)

                                                                                    tGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGct        >  2:1939075/1‑91 (MQ=255)

                                                                                     ggATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGctc       >  1:962317/1‑91 (MQ=255)

                                                                                     ggATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGctc       >  2:3759366/1‑91 (MQ=255)

                                                                                      gATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGctct      <  1:1554708/91‑1 (MQ=255)

                                                                                      gATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGctct      <  1:761430/91‑1 (MQ=255)

                                                                                      gATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGctct      <  2:126902/91‑1 (MQ=255)

                                                                                         ttGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGAGCTAG‑TCtttt   <  1:1858775/91‑1 (MQ=255)

                                                                                         ttGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCtttt   <  1:1580849/91‑1 (MQ=255)

                                                                                          TGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTa  >  2:159621‑M1/1‑91 (MQ=255)

GCTAGGTAATCCGAAAAGTGGCAGTGCTATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTA  >  USA300TCH1516_ALE/763655‑763835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.