BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	763745 =	173 (0.850)	26 (0.140)	10/148	NT	14.5%	coding (381/1554 nt)	ybhI	Inner membrane protein YbhI
*	?	USA300TCH1516_ALE	763773 =	146 (0.780)	26 (0.140)	10/148	NT	14.5%	coding (409/1554 nt)	ybhI	Inner membrane protein YbhI

Only 100 of 222 total aligned reads displayed.

ATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACTAG  >  USA300TCH1516_ALE/763683‑763864

aTTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAg                                                                                              <  1:1128967/91‑1 (MQ=255)

  aagagctagtcttttatgcaaattcgtttcttgcatagcagcagccaaaaataatgcagcTGCAACTTCAGCTGTAGCTCTCGTTGCAGCt                                                                                            >  2:3463203‑M1/61‑91 (MQ=255)

    tAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGc                                                                                          <  2:3055343/91‑1 (MQ=255)

    tAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGc                                                                                          <  1:3690085/91‑1 (MQ=255)

     aGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCa                                                                                         >  2:162702/1‑91 (MQ=255)

       cTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCatt                                                                                       <  2:3716692/91‑1 (MQ=255)

         ggAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTGTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCattat                                                                                     <  1:3948194/91‑1 (MQ=255)

          gAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCattatt                                                                                    >  1:2576880/1‑91 (MQ=255)

              tGACCTTCTAGTAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTg                                                                                <  1:3576774/91‑1 (MQ=255)

              tGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTg                                                                                >  2:110272/1‑91 (MQ=255)

              tGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTg                                                                                <  2:801757/91‑1 (MQ=255)

               gACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTgg                                                                               >  2:442275/1‑91 (MQ=255)

                aCCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgc                                                                              >  1:2266000/1‑91 (MQ=255)

                  cTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGgctg                                                                            >  1:190641/1‑91 (MQ=255)

                        ggAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTa                                                                      <  1:576610/91‑1 (MQ=255)

                        ggAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTa                                                                      <  1:3741753/91‑1 (MQ=255)

                        ggAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTa                                                                      >  1:2083186/1‑91 (MQ=255)

                         gAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTAt                                                                     >  1:1422539/1‑91 (MQ=255)

                           aCTAATCATGCATTATCATTAGCGCTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCTTTATTTTTGGCTGCTGCTATGc                                                                   >  2:708372/1‑91 (MQ=255)

                                tCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaa                                                              <  2:1408977/91‑1 (MQ=255)

                                tCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaa                                                              >  2:319015/1‑91 (MQ=255)

                                tCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaa                                                              <  2:1296167/91‑1 (MQ=255)

                                tCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaa                                                              <  2:1362831/91‑1 (MQ=255)

                                 cATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaaa                                                             >  1:160595/1‑91 (MQ=255)

                                 cATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaaa                                                             <  2:1009796/91‑1 (MQ=255)

                                 cATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaaa                                                             <  1:38037/91‑1 (MQ=255)

                                 cATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGaaa                                                             <  2:1614655/91‑1 (MQ=255)

                                  aTGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAAc                                                            >  1:178558/1‑91 (MQ=255)

                                  aTGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAAc                                                            <  1:1515841/91‑1 (MQ=255)

                                  aTGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAAc                                                            >  1:3012173/1‑91 (MQ=255)

                                    gCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGa                                                          <  2:2934804/91‑1 (MQ=255)

                                    gCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGa                                                          >  2:2211984/1‑91 (MQ=255)

                                       ttATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAAtt                                                       <  1:180474/91‑1 (MQ=255)

                                       ttATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAAtt                                                       <  2:1825931/91‑1 (MQ=255)

                                         aTCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTg                                                     <  1:3870409/91‑1 (MQ=255)

                                           cATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCa                                                   <  2:1527835/91‑1 (MQ=255)

                                             gccaaaaataatgcagctgcaacgagagctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATa                                                 >  1:1255700‑M2/46‑91 (MQ=255)

                                               aGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATaaa                                               >  1:3100153/1‑91 (MQ=255)

                                                   tttAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑c                                          >  2:689178/1‑91 (MQ=255)

                                                    ttAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTCTTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑Ct                                         >  2:3548198/1‑91 (MQ=255)

                                                     tAGTGGATTTGCAACGTCAGCTGTATATCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGagct                                         <  2:3418354/91‑4 (MQ=255)

                                                      aGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGagcta                                        <  1:741064/91‑5 (MQ=255)

                                                      aGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAg                                       >  2:2021851/1‑91 (MQ=255)

                                                      aGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAg                                       >  2:2727848/1‑91 (MQ=255)

                                                       gTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCTTTATGTTTGGCTGCTGCTATGCAAGCAACGAATTTGCATCAGAGA‑CTAGc                                      >  2:3466088/1‑91 (MQ=255)

                                                       gTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGc                                      <  1:3652341/91‑1 (MQ=255)

                                                       gTGGATTTGCAACTTCAGCTGTAGCGCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGc                                      <  2:3239610/91‑1 (MQ=255)

                                                        tGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGct                                     >  2:1939075/1‑91 (MQ=255)

                                                          gATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGctct                                   <  2:126902/91‑1 (MQ=255)

                                                          gATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGctct                                   <  1:1557032/91‑1 (MQ=255)

                                                             ttGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGAGCTAG‑TCtttt                                <  1:2802145/91‑1 (MQ=255)

                                                               GCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGC‑CTAGCTCTTTTAg                              <  2:757675‑M1/91‑1 (MQ=255)

                                                                caacgagagctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTATTAgt                             >  2:3195681‑M2/27‑91 (MQ=255)

                                                                CAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAgt                             >  1:3181513‑M1/1‑91 (MQ=255)

                                                                CAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAgt                             <  1:2426097‑M1/91‑1 (MQ=255)

                                                                 AACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAgtg                            >  1:1153066‑M1/1‑91 (MQ=255)

                                                                  ACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAgtgt                           <  2:57665‑M1/91‑1 (MQ=255)

                                                                   CTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGtt                          >  2:1289777‑M1/1‑91 (MQ=255)

                                                                   CTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGtt                          >  1:2509254‑M1/1‑91 (MQ=255)

                                                                    ttcggCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         <  1:3557694/87‑1 (MQ=255)

                                                                    ttCAGCTGTGGCTCTCGTTGCAGCTGCATTATTTTTGGCGGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         <  2:242235/91‑1 (MQ=255)

                                                                    ttCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         <  1:3438737/91‑1 (MQ=255)

                                                                    ttCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         <  2:1480782/91‑1 (MQ=255)

                                                                    ttCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         <  1:2925085/91‑1 (MQ=255)

                                                                    ttCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         <  1:2868787/91‑1 (MQ=255)

                                                                    ttCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         <  1:1325893/91‑1 (MQ=255)

                                                                    gagagctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         >  2:2999033‑M2/23‑91 (MQ=255)

                                                                    gagagctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTa                         >  1:2117161‑M2/23‑91 (MQ=255)

                                                                     agagctacagctgaagttgcaGCTGCATTATTTTTTGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTAt                        >  2:766508‑M2/22‑91 (MQ=255)

                                                                     agagctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTAt                        >  2:3844475‑M2/22‑91 (MQ=255)

                                                                     agagctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTAt                        >  1:1168657‑M2/22‑91 (MQ=255)

                                                                      gagctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATc                       >  1:953447‑M2/21‑91 (MQ=255)

                                                                      gagctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATc                       >  1:1080378‑M2/21‑91 (MQ=255)

                                                                      cAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATc                       <  2:2291310/91‑1 (MQ=255)

                                                                        gctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCaa                     >  1:1868218‑M2/19‑91 (MQ=255)

                                                                        gctacagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCaa                     >  2:2885720‑M2/19‑91 (MQ=255)

                                                                        gCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCaa                     >  2:3753262/1‑91 (MQ=255)

                                                                        gCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCaa                     >  1:791289/1‑91 (MQ=255)

                                                                         cTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAAt                    >  1:1410851/1‑91 (MQ=255)

                                                                          ggTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAGCGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAAtt                   <  2:864056/90‑1 (MQ=255)

                                                                           gTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTGTCAAttg                  >  1:1960968/1‑91 (MQ=255)

                                                                           gTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAAttg                  >  2:1875391/1‑91 (MQ=255)

                                                                           gTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAAttg                  <  1:263721/91‑1 (MQ=255)

                                                                           gTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAAttg                  <  1:2562623/91‑1 (MQ=255)

                                                                           acagctgaagttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAAttg                  >  1:1492392‑M2/16‑91 (MQ=255)

                                                                              gCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAAttgttg               >  1:1672228/1‑91 (MQ=255)

                                                                              gCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAAttgttg               >  1:2355007/1‑91 (MQ=255)

                                                                                tctcGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAACTTGCATAAAAGA‑CGAGCTCTTTTAGTGCTATCAATTggtggt             >  2:2301142/1‑91 (MQ=255)

                                                                                 ctcGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGta            <  1:2950571/91‑1 (MQ=255)

                                                                                 ctcGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGta            >  1:652476/1‑91 (MQ=255)

                                                                                    gttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGtaata         <  1:1224276‑M2/85‑1 (MQ=255)

                                                                                     ttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGtaataa        >  2:2186254‑M2/6‑91 (MQ=255)

                                                                                     ttgcaGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGtaataa        >  2:1741228‑M2/6‑91 (MQ=255)

                                                                                        caGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAAc     <  2:2860867‑M2/89‑1 (MQ=255)

                                                                                        caGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCCCTTTTAGTGTTATCCATTGTTGGTAATAAAAc     >  1:3385174‑M2/3‑91 (MQ=255)

                                                                                         aGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACt    >  1:2154722‑M2/2‑91 (MQ=255)

                                                                                         aGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACt    >  1:99926‑M2/2‑91 (MQ=255)

                                                                                         aGCTGCATTATTTTTGGCTGCCGCTCTGCAAGCAACGGATTTGCATAAAAGA‑CTAGCTCTGTTAGTGTTAGCAATTGTTGGTAATAAAACt    >  2:2749784/1‑91 (MQ=255)

                                                                                          gCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACTa   >  2:3725024/1‑91 (MQ=255)

                                                                                          gCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACTa   >  2:639958/1‑91 (MQ=255)

ATTTTAGCTGGAAGTGACCTTCTAGGAACTAATCATGCATTATCATTAGCGTTTAGTGGATTTGCAACTTCAGCTGTAGCTCTCGTTGCAGCTGCATTATTTTTGGCTGCTGCTATGCAAGAAACGAATTTGCATAAAAGA‑CTAGCTCTTTTAGTGTTATCAATTGTTGGTAATAAAACTAG  >  USA300TCH1516_ALE/763683‑763864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.