| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 802141 | 148 (0.730) | 17 (0.100) | 10/138 | NT | 10.3% | intergenic (+382/+242) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase |
| ? | USA300TCH1516_ALE | = 802168 | 169 (0.960) | intergenic (+409/+215) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
ATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/802041‑802141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcggatgaCGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAA < USA300TCH1516_ALE/802168‑802081 ATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATA < 2:3100276/91‑1ATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATA > 2:2927966/1‑91ATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATA > 2:2927465/1‑91ATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATA > 1:2709619/1‑91 GATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAA > 1:2874856/1‑91 GATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAA > 1:2763423/1‑91 GATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAA < 1:274643/91‑1 GATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCCCAATAAATGTTAGTTTATCTTATTATTATAAA > 1:1552680/1‑91 ATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAAT < 2:1278200/91‑1 ATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAAT < 2:1900389/91‑1 AAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCG > 2:992598/1‑91 AAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCG > 2:837187/1‑91 AAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGG > 1:474972/1‑91 AAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGG > 1:2923117/1‑91 AAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGG > 2:2745047/1‑91 AGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGA > 2:2280736/1‑91 AGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGA > 2:2406728/1‑91 AGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGA > 2:248982/1‑91 AGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGA < 2:303603/91‑1 AGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGA > 1:662431/1‑91 GAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGAT < 2:2234548/91‑1 GAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGAT > 2:1031092/1‑91 GAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGAT > 1:1133041/1‑91 GAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGAT > 1:131441/1‑91 AATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATG < 2:961412/91‑1 AATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATG < 2:3713396/91‑1 AATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATG > 1:1584562/1‑91 AATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATG > 1:2939891/1‑91 ATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTTCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA < 1:3945777/91‑1 ATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA > 1:1093671/1‑91 ATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCAT < 2:2729396/91‑1 TCGTTCTTTATCATTTCCGTCCCGATCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAAC < 2:1696278/91‑1 CGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACg < 2:1317270/91‑2 CGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACA < 2:2832309/91‑1 CGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACA < 2:2832265/91‑1 CGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACA < 2:781766/91‑1 CTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATT < 1:2401578/91‑1 TATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCAT < 1:3915855/91‑1 TCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:3508775/91‑1 TCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:2091805/91‑1 TCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:2094059/91‑1 TCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:2092095/91‑1 TCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:2092047/91‑1 CATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCG < 2:3559288/91‑1 TTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATGATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGAT < 2:3466932/91‑1 CGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATGCATCCGATTTAT < 1:3048878/91‑1 GTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATA < 2:2940495/91‑1 AAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGA < 1:3749557/91‑1 AAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGA > 1:2020788/1‑91 AATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAA < 2:3761747/91‑1 AATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAA > 2:1238236/1‑91 AATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAA > 1:983708/1‑91 AATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAA > 2:973864/1‑91 AATCGGACGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAA > 2:1305895/1‑91 TCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAAT < 1:2879474/91‑1 GGATGACGTGTACTCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGA > 1:3050193/1‑91 GGATGACGTGTACTCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGA > 1:3049880/1‑91 GGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGA > 1:1461384/1‑91 GGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGA < 1:2025973/91‑1 GGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGA > 1:2893235/1‑91 GATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGAT > 2:3223570/1‑91 GATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGAT > 2:3760538/1‑91 GATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGAT < 2:1757486/91‑1 ATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATA > 2:3870658/1‑91 ATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATA > 1:876496/1‑91 ATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATA < 1:855591/91‑1 ATGACGTGTAATCTGCCATAGATTAACAAATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATA > 1:1263494/1‑91 TGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAA < 2:3523374/91‑1 TGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAA > 2:952131/1‑91 TGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAA > 2:952207/1‑91 ATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/802041‑802141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcggatgaCGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAA < USA300TCH1516_ALE/802168‑802081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |