| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 802141 | 148 (0.730) | 17 (0.100) | 10/138 | NT | 10.3% | intergenic (+382/+242) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase |
| ? | USA300TCH1516_ALE | = 802168 | 169 (0.960) | intergenic (+409/+215) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
Only 100 of 240 total aligned reads displayed.
TTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAA > USA300TCH1516_ALE/802081‑802257 | ttATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtca > 2:952207‑M2/1‑88 (MQ=255) tATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATTTGTTAATCTATGGCAGATTACACGtcat > 1:1263494‑M2/1‑87 (MQ=255) tATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcat > 1:876496‑M2/1‑87 (MQ=255) aTCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatc > 2:3760538‑M2/1‑86 (MQ=255) aTCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatc < 2:1757486‑M2/91‑6 (MQ=255) tCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatcc > 1:1461384‑M2/1‑85 (MQ=255) tCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatcc > 1:2893235‑M2/1‑85 (MQ=255) tCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGAGTACACGtcatcc > 1:3049880‑M2/1‑85 (MQ=255) tCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccgattt > 1:2020788‑M2/1‑80 (MQ=255) ccGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGCTTACACGTCCTCCGAtttt > 2:1819381/1‑91 (MQ=255) gTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAtttttt < 1:998617/91‑1 (MQ=255) tCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTta < 1:3753435/91‑1 (MQ=255) tCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTta > 1:1884758/1‑91 (MQ=255) tCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTta > 1:1911478/1‑91 (MQ=255) cccGCTCTCAATAAAGGTGAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTtat < 2:2741551/91‑1 (MQ=255) ccGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTtata > 2:3832506/1‑91 (MQ=255) ccGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTtata > 2:2454377/1‑91 (MQ=255) cGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAg < 2:3326691/91‑1 (MQ=255) cGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAg > 2:304036/1‑91 (MQ=255) cGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAg < 1:2656907/91‑1 (MQ=255) ctcAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAtt > 2:2831660/1‑91 (MQ=255) aaTAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGa < 2:912606/91‑1 (MQ=255) aTAAATGCTAGTTTATCTTATTATTATAAATCCGATGAATGTGTTTATCTATGGCAGATTACACGTCATCCGATTTTTTATAGACTTTGaa > 2:3883205/1‑91 (MQ=255) tAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaa > 1:1938581/1‑91 (MQ=255) aaTGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaaaa > 2:2369532/1‑91 (MQ=255) aTGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAg > 1:1738662/1‑91 (MQ=255) tGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGa > 1:1498865/1‑91 (MQ=255) tGTTAGTTTATCTTATTATTATAAATCGGAAGAATGTGTTAATCTATGGCAGATTACACGACATACGATTTTATATAGAATTTGAAAAAGa > 2:2101742/1‑91 (MQ=255) gTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGAc > 1:2666612/1‑91 (MQ=255) tAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGc > 1:185340/1‑91 (MQ=255) tAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGc > 1:3729786/1‑91 (MQ=255) tAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGc < 1:3633232/91‑1 (MQ=255) tAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATATATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGc > 2:3248259/1‑91 (MQ=255) aGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCa < 1:1001451/91‑1 (MQ=255) gTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCAt < 1:3448684/91‑1 (MQ=255) gttATCTTATTATTATCGATCGTATGTTTGTGTTAATCTGTGGCAGTTTACGCGTTATCCGATTTTTTATAGAAGTTGAAATAGACGCATa > 2:604140/2‑91 (MQ=255) ttAGCTTATTATGAGAAATCGGATGAATGTGTGAATCTATGGCAGATGACACGTCATCCGATGTTTTATAGAATTTGAAAAAGACGCATaa < 2:2392801/91‑1 (MQ=255) tATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATaaa > 1:2037284/1‑91 (MQ=255) tCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAcc > 2:3218600/1‑91 (MQ=255) tattattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACt < 1:3956079/91‑1 (MQ=255) ttattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTAt > 1:3541209/1‑91 (MQ=255) tattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATg > 1:380845/1‑91 (MQ=255) attatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGa > 1:2154217/1‑91 (MQ=255) ttatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAt < 1:1297976/91‑1 (MQ=255) tataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAtt > 2:2111941/1‑91 (MQ=255) tataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAtt > 2:1405600/1‑91 (MQ=255) ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAttt < 1:3905987/91‑1 (MQ=255) ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAttt < 1:3217866/91‑1 (MQ=255) ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAttt < 1:2837654/91‑1 (MQ=255) ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTCGAAAAAGACGCATACACCTCTATGAttt < 2:2031167/91‑1 (MQ=255) taAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTa > 1:1574083/1‑91 (MQ=255) aaTCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaa < 2:2440011/91‑1 (MQ=255) aTCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaaa < 1:846007/91‑1 (MQ=255) aTCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaaa > 1:2724768/1‑91 (MQ=255) tCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAAt > 2:3208133/1‑91 (MQ=255) cGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatg < 2:3559288‑M2/91‑58 (MQ=255) ggATGAATGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatga < 1:2094059‑M2/91‑59 (MQ=255) ggATGAATGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatga < 1:2092047‑M2/91‑59 (MQ=255) gATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATaca < 1:3250066/91‑1 (MQ=255) aTGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaa > 2:2300606/1‑91 (MQ=255) aaTGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatgataaag < 1:2401578‑M2/91‑64 (MQ=255) aaTGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACat < 2:1389425/91‑1 (MQ=255) aaTGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACat < 2:2965806/91‑1 (MQ=255) aaTGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATGTAAAATACAACat < 1:966805/91‑1 (MQ=255) aTGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatc > 2:1026385/1‑91 (MQ=255) aTGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatc > 2:3464200/1‑91 (MQ=255) tgtgTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatca < 2:1430630/91‑1 (MQ=255) gtgtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaa < 1:1821065/91‑1 (MQ=255) tgtTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatgataaagaacg < 2:781766‑M2/91‑68 (MQ=255) tgtTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatgataaagaacg < 2:2832309‑M2/91‑68 (MQ=255) cgttAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatgataaagaacg < 2:1317270‑M2/90‑68 (MQ=255) gtTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagatcgggacggaaatgataaagaacga < 2:1696278‑M2/91‑69 (MQ=255) gtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatc > 1:1713778/1‑91 (MQ=255) gtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatc > 1:1714217/1‑91 (MQ=255) ttAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatca < 1:3005617/91‑1 (MQ=255) ttAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatca > 2:902380/1‑91 (MQ=255) aTCTATGTCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt < 2:746598/91‑1 (MQ=255) aTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt > 1:3112438/1‑91 (MQ=255) aTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt < 2:1525829/91‑1 (MQ=255) cTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTa > 2:348373/1‑91 (MQ=255) tATGGCAGATTACACGTCATCCGACTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAg < 2:3683152/91‑1 (MQ=255) tATGGCAGATGACACGTCATCCGATGTTTTATAGAAATTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAg < 2:453366/91‑1 (MQ=255) aTGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGt < 1:2510434/91‑1 (MQ=255) aTGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGt > 1:263742/1‑91 (MQ=255) aTGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGt > 1:1084271/1‑91 (MQ=255) ggCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTgg > 2:3798153/1‑91 (MQ=255) ggCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTgg > 2:1929077/1‑91 (MQ=255) gCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGc > 2:2662961/1‑91 (MQ=255) cAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCa > 2:3397844/1‑91 (MQ=255) gATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATg > 1:2925542/1‑91 (MQ=255) gATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATg > 1:3451006/1‑91 (MQ=255) aatACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgc < 1:1012382/89‑1 (MQ=255) ttACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcg > 2:1305424/1‑91 (MQ=255) acacGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGcc < 2:1621992/91‑1 (MQ=255) cacGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCa > 1:3368772/1‑91 (MQ=255) acGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaa > 1:671100/1‑91 (MQ=255) acGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaa > 1:671487/1‑91 (MQ=255) acGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaa > 2:2539430/1‑91 (MQ=255) cGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaaa > 1:782567/1‑91 (MQ=255) cGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaaa > 2:195620/1‑91 (MQ=255) | TTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAA > USA300TCH1516_ALE/802081‑802257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |