| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 815690 = | 214 (1.050) | 20 (0.110) | 11/138 | NT | 11.5% | intergenic (+5/+312) | yclQ/USA300HOU_RS03990 | putative ABC transporter solute‑binding protein YclQ/hypothetical protein |
| ? | USA300TCH1516_ALE | 815739 = | 125 (0.710) | intergenic (+54/+263) | yclQ/USA300HOU_RS03990 | putative ABC transporter solute‑binding protein YclQ/hypothetical protein | |||||
ACATTTTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/815790‑815690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccctcttttCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTTGT > USA300TCH1516_ALE/815739‑815828 ACATTTTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGGGCAATGATTAAGACCTTTAACCATTGTT < 2:1987084/91‑1 CATTTTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTC > 1:2554520/1‑91 ATTTTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCC > 2:1468406/1‑91 TTTTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCC > 2:1536074/1‑91 TTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCT > 2:1178861/1‑91 TTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCT < 2:1466429/91‑1 TTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCT > 2:1179073/1‑91 TTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCT > 2:1178590/1‑91 TTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCT < 2:788053/91‑1 AGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAACGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCT > 2:3043864/1‑91 GAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTT > 1:460686/1‑91 GAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTT > 1:940820/1‑91 AGTCGAGGACATTGAGTGACGTCCCAGAGTTCCTTTTTTACAGAAAAGAGGGGAGCAATGATTAAGACCTCTAACCATTGTTCCCCTCTTT < 2:3213978/91‑1 GTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTT > 2:1033172/1‑91 AGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAG > 1:3053812/1‑91 GAAAAGCGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGTCGCCAATCAATGTCCTAGA > 2:2379924/1‑91 GAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGA > 1:1043803/1‑91 AGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCT > 1:2615212/1‑91 GGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAA > 1:2834011/1‑91 GGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAA > 2:3217854/1‑91 GGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAA > 2:3795361/1‑91 GGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAA > 1:2620724/1‑91 GGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAA > 1:2620702/1‑91 GGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAA > 2:2623943/1‑91 GGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAA > 1:3929905/1‑91 GGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAA > 2:3740955/1‑91 GGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAAT > 2:1052546/1‑91 GAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATG > 2:254451/1‑91 AATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCT > 1:1050215/1‑91 AATGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCT > 1:911522/1‑91 TGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTATAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGT > 2:254655/1‑91 TGATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTATAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGT > 2:254654/1‑91 GATTAAGACCTTTAACCATTGTTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTT > 1:2864256/1‑91 TTAAGACCTTTAACCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGT > 1:1567850/1‑91 TCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAAC < 1:351562/91‑1 TCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAAC > 1:1491631/1‑91 TCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAAC < 2:1902462/91‑1 TCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAAC > 2:1936607/1‑91 CCCCTCTTTTCTTTAAAAATGGAAATCTTGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACA > 2:538589/1‑91 CCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACA > 2:903489/1‑91 CCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACA < 2:3826043/91‑1 CCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACA < 1:2656759/91‑1 CCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACA < 1:1666084/91‑1 CCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACAT > 1:546591/1‑91 CCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACAT > 1:2344343/1‑91 CCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATG < 2:2251158/91‑1 CCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATG < 1:1405926/91‑1 CTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGT > 2:1375470/1‑91 CTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTAC > 1:1842553/1‑91 TTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACT > 2:2993348/1‑91 TTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACT < 1:3866976/91‑1 TTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTT > 1:1774070/1‑91 TTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTT > 1:1771783/1‑91 TTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTT < 1:1733409/91‑1 TTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTT > 2:1825352/1‑91 TTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTTG > 2:2327533/1‑91 TCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTTGT > 1:3044489/1‑91 TCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTTGT < 1:378023/91‑1 TCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTTGT < 1:1116523/91‑1 ACATTTTAGAGTCTAGGACATTGATTGACGTCCCAGATTTCCTTTTTTAAAGAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/815790‑815690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccctcttttCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGACTCTAAAATGTTCTGTTGTCAGTCGTTGGTTGAATGAACATGTACTTGT > USA300TCH1516_ALE/815739‑815828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |