New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 815690 =214 (1.050)20 (0.110) 11/138 NT 11.5% intergenic (+5/+312) yclQ/USA300HOU_RS03990 putative ABC transporter solute‑binding protein YclQ/hypothetical protein
?USA300TCH1516_ALE 815739 = 125 (0.710)intergenic (+54/+263) yclQ/USA300HOU_RS03990 putative ABC transporter solute‑binding protein YclQ/hypothetical protein

Only 100 of 283 total aligned reads displayed.

TAGATCCTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGAC  >  USA300TCH1516_ALE/815600‑815780
                                                                                          |                                                                                          
tAGATCCTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTa                                                                                            >  2:453108/1‑91 (MQ=255)
tAGATCCTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTa                                                                                            >  1:1447580/1‑91 (MQ=255)
acaagtacatgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaaga                                                                                            >  1:3044489‑M1/91‑91 (MQ=255)
acaagtacatgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaaga                                                                                            <  1:378023‑M1/1‑1 (MQ=255)
 aGATCCTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTaa                                                                                           <  2:1985867/91‑1 (MQ=255)
  ggatcTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTaaa                                                                                          >  1:2752654/5‑91 (MQ=255)
  gATCCTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTaaa                                                                                          <  1:2364482/91‑1 (MQ=255)
  gATCCTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTaaa                                                                                          <  1:766503/91‑1 (MQ=255)
  aagtacatgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagaaa                                                                                          <  1:1733409‑M1/3‑1 (MQ=255)
  aagtacatgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagaaa                                                                                          >  1:1774070‑M1/89‑91 (MQ=255)
   agtacatgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagaaaa                                                                                         >  2:2993348‑M1/88‑91 (MQ=255)
     ccTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTACACATATTGAGGAACTTGATAAAGTTGTAAAATCATTTTAAAaga                                                                                       >  2:3112723/1‑91 (MQ=255)
     ccTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAaga                                                                                       <  2:37282/91‑1 (MQ=255)
      cTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAagag                                                                                      >  2:431388/1‑91 (MQ=255)
       catgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAgg                                                                                     <  1:1405926‑M1/8‑1 (MQ=255)
        aaaTTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAggg                                                                                    <  1:1586108/91‑1 (MQ=255)
        aaaTTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAggg                                                                                    <  1:1289105/91‑1 (MQ=255)
         tgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAgggg                                                                                   <  2:3826043‑M1/10‑1 (MQ=255)
         tgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAgggg                                                                                   >  2:903489‑M1/82‑91 (MQ=255)
         tgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAgggg                                                                                   <  1:1666084‑M1/10‑1 (MQ=255)
         tgttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtccaagatttccatttttaaagAAAAGAgggg                                                                                   >  2:538589‑M1/82‑91 (MQ=255)
          gttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAGGGGa                                                                                  >  2:1936607‑M1/81‑91 (MQ=255)
          gttcattcaaccaacgactgacaacagaacattttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAGGGGa                                                                                  >  1:1491631‑M1/81‑91 (MQ=255)
             aTGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACa                                                                               >  1:2299449/1‑91 (MQ=255)
             aTGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACa                                                                               >  2:2172673/1‑91 (MQ=255)
             aTGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACa                                                                               >  2:2695110/1‑91 (MQ=255)
              tGGTACTGTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACaa                                                                              <  2:2376861/91‑1 (MQ=255)
               ggTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGCAACTTGATAAAGTTGTAAAATAATTTTAAGAGAGGGGAACAAt                                                                             >  1:3958337/1‑91 (MQ=255)
                gTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATg                                                                            >  1:3466644/1‑91 (MQ=255)
                gTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATg                                                                            >  1:1017995/1‑91 (MQ=255)
                  aCTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGt                                                                          <  2:413925/91‑1 (MQ=255)
                  aCTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGt                                                                          <  2:3405442/91‑1 (MQ=255)
                    tttGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTa                                                                        <  2:1266699/91‑1 (MQ=255)
                     ttGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTaa                                                                       >  1:2253088/1‑91 (MQ=255)
                       gCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAg                                                                     <  2:1667193/91‑1 (MQ=255)
                        cAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAgg                                                                    >  1:437164/1‑91 (MQ=255)
                         tgCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGt                                                                   <  2:3930403/90‑1 (MQ=255)
                         aGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGt                                                                   >  1:2555977/1‑91 (MQ=255)
                           cTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCt                                                                 <  2:508355/91‑1 (MQ=255)
                           cTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCt                                                                 <  2:2430543/91‑1 (MQ=255)
                            tGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCtt                                                                >  2:399883/1‑91 (MQ=255)
                            tGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCtt                                                                <  2:87706/91‑1 (MQ=255)
                            tGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCtt                                                                >  2:2582952/1‑91 (MQ=255)
                             ggATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTa                                                               >  2:2518589/1‑91 (MQ=255)
                              gATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTaa                                                              <  1:1908455/91‑1 (MQ=255)
                                tCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATc                                                            <  1:3199111/91‑1 (MQ=255)
                                tCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATc                                                            <  1:34127/91‑1 (MQ=255)
                                tCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATc                                                            <  1:2654476/91‑1 (MQ=255)
                                 acagaacattttagagtctaggacattgattgacgtcccagatttccttttataaagAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCa                                                           >  2:254654‑M1/58‑91 (MQ=255)
                                  aactacaactacAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCAt                                                          <  1:1166697/91‑1 (MQ=255)
                                   actacaactacaATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCAtt                                                         >  1:1437370/1‑91 (MQ=255)
                                      acaactacaaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCt                                                      <  1:398267/91‑1 (MQ=255)
                                       caactacaaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTc                                                     <  1:2025460/91‑1 (MQ=255)
                                         ttttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTccc                                                   >  2:2623943‑M1/50‑91 (MQ=255)
                                         ttttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTccc                                                   >  1:2620724‑M1/50‑91 (MQ=255)
                                         ttttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTccc                                                   >  2:3740955‑M1/50‑91 (MQ=255)
                                         actacaaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTccc                                                   <  1:1827582/91‑1 (MQ=255)
                                         actacaaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTccc                                                   >  2:1161695/1‑91 (MQ=255)
                                          tttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTcccc                                                  >  2:3217854‑M1/49‑91 (MQ=255)
                                          tttagagtctaggacattgattgacgtcccagatttccttttttaaagAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTcccc                                                  >  1:2834011‑M1/49‑91 (MQ=255)
                                          ctacaaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTcccc                                                  <  1:2456581/91‑1 (MQ=255)
                                           tacaaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCct                                                 <  2:608764/91‑1 (MQ=255)
                                            acaaTTAAACAAATGGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCctc                                                <  2:3555784/91‑1 (MQ=255)
                                             caaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCctct                                               <  1:3063239/91‑1 (MQ=255)
                                             caaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCctct                                               >  1:1096089/1‑91 (MQ=255)
                                             caaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCctct                                               >  2:1091958/1‑91 (MQ=255)
                                              aaTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCtctt                                              <  1:2099217/91‑1 (MQ=255)
                                               aTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAGCAATGATTAAGACCTTTAACCATTGTTCCCCtcttt                                             <  1:319300/91‑1 (MQ=14)
                                               aTTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCtcttt                                             <  2:823876/91‑1 (MQ=255)
                                                 tAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCtcttttc                                           <  2:1752391/91‑1 (MQ=255)
                                                 gagaCAAATTGAGGAACTGGATAAAGCTGTAAAATAATTTGAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCtcttttc                                           <  1:3296853/88‑1 (MQ=255)
                                                   aaCAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCtcttttctt                                         <  2:111026/91‑1 (MQ=255)
                                                        aTTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTaaaa                                    <  2:2322575/91‑1 (MQ=255)
                                                        aTTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTaaaa                                    <  2:3850080/91‑1 (MQ=255)
                                                           gAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAg                                 <  1:3524005/91‑1 (MQ=255)
                                                            aGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAgg                                >  1:366838/1‑91 (MQ=255)
                                                             ggAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGa                               >  2:2842875/1‑91 (MQ=255)
                                                             ggAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGa                               >  1:2897729/1‑91 (MQ=255)
                                                                 cTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATc                           >  2:3644046/1‑91 (MQ=255)
                                                                 cTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATc                           >  1:3711774/1‑91 (MQ=255)
                                                                   tGATAAAGTTGTAAAATAATTTTAAAAGAGGGGCACAGTGGTTAAACGTCTTAATCATTACTCCCCTCTTTTCTTTAAAAAAGGAAATCTg                         >  1:3158394/1‑91 (MQ=255)
                                                                      tAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGa                      >  2:3253274/1‑91 (MQ=255)
                                                                       aaaGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATAGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGAc                     >  2:3906845/1‑91 (MQ=255)
                                                                        aaGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACg                    >  1:2486916/1‑91 (MQ=255)
                                                                        aaGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACg                    >  1:1009090/1‑91 (MQ=255)
                                                                            tGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGtcaa                <  1:3582655/91‑1 (MQ=255)
                                                                              tAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGtcaatc              <  1:1971354/91‑1 (MQ=255)
                                                                                aaaTAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGtcaatcaa            <  2:1384896/91‑1 (MQ=255)
                                                                                aaaTAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGtcaatcaa            <  1:151290/91‑1 (MQ=255)
                                                                                aaaTAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGtcaatcaa            <  2:2498916/91‑1 (MQ=255)
                                                                                 aataatTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTcaatcaat           <  1:2563544/91‑1 (MQ=255)
                                                                                 aataatTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTcaatcaat           >  2:2394555/1‑91 (MQ=255)
                                                                                  ataatTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATg          >  1:634094/1‑91 (MQ=255)
                                                                                    aatTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTc        >  2:1494286/1‑91 (MQ=255)
                                                                                        ttAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAg    <  1:3766886/91‑1 (MQ=255)
                                                                                        ttAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAg    <  1:1863488/91‑1 (MQ=255)
                                                                                         tAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGa   >  2:486876/1‑91 (MQ=255)
                                                                                         tAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGa   >  2:3800030/1‑91 (MQ=255)
                                                                                         tAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGa   <  2:3173219/91‑1 (MQ=255)
                                                                                          AAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGAc  >  2:1033172‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
TAGATCCTAAATTATGGTACTTTGCAGCTGGATCAACTACAACTACAATTAAACAAATTGAGGAACTTGATAAAGTTGTAAAATAATTTTAAAAGAGGGGAACAATGGTTAAAGGTCTTAATCATTGCTCCCCTCTTTTCTTTAAAAAAGGAAATCTGGGACGTCAATCAATGTCCTAGAC  >  USA300TCH1516_ALE/815600‑815780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.