| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 828546 = | 188 (0.920) | 10 (0.050) | 5/154 | NT | 5.5% | coding (98/1083 nt) | comFA | ComF operon protein 1 |
| ? | USA300TCH1516_ALE | 828574 = | 163 (0.830) | coding (126/1083 nt) | comFA | ComF operon protein 1 | |||||
GAAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/828638‑828546‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACA > USA300TCH1516_ALE/828574‑828663 GAAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGC > 2:1056163/1‑91GAAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGC > 2:1056277/1‑91GAAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGC < 2:255469/91‑1 AAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCA > 1:3766048/1‑91 AAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCA < 2:3261901/91‑1 AAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCA < 2:3261856/91‑1 AAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCA > 2:2010829/1‑91 AAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGCATGGCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCA < 2:1856459/91‑1 AACATCATTTCTGTCTTACCTGCAGCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCAT < 2:3848945/91‑1 AACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCAT < 2:3848976/91‑1 TAATGGCTCGAACAATATGTTCTGAGGCATAAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATG > 1:1082408/1‑91 GGCTCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTC > 2:3855276/1‑91 GGCTCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTC > 2:3855216/1‑91 GGCTCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTC > 1:3608285/1‑91 GGCTCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTC > 1:3738332/1‑91 GCTCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCA > 1:2452695/1‑91 GCTCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCA > 1:3399456/1‑91 GCTCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCA > 1:2452884/1‑91 CTCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAA > 1:468923/1‑91 TCGAACAATATGTTCTGAGGCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAG > 2:1259915/1‑91 ATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATAC > 1:950806/1‑91 TTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACA < 2:1785218/91‑1 TTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACA < 2:1785185/91‑1 GAAACATCATTTCTGTCTTACCTGCACCTGTTACGGCATATAACAAAATCGTTTGTCTCTTTCTAATGGCTCGAACAATATGTTCTGAGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/828638‑828546‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACA > USA300TCH1516_ALE/828574‑828663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |