BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	828546 =	188 (0.920)	10 (0.050)	5/154	NT	5.5%	coding (98/1083 nt)	comFA	ComF operon protein 1
*	?	USA300TCH1516_ALE	828574 =	163 (0.830)	10 (0.050)	5/154	NT	5.5%	coding (126/1083 nt)	comFA	ComF operon protein 1

Only 100 of 214 total aligned reads displayed.

TTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAG  >  USA300TCH1516_ALE/828484‑828664

ttCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCAtt                                                                                            >  1:3178772/1‑91 (MQ=255)

 tCGCAAAGTTCATCACAAGCATATTATCCTCTCTCATTTGAATTATCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTa                                                                                           >  2:318155/1‑91 (MQ=255)

 tCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTa                                                                                           <  2:336979/91‑1 (MQ=255)

 catcatttctgtcttacctgcacctgttacggcatataacaaaatcgtttgtctctttcttATGCCTCAGAACATATTGTTCGAGCCATTa                                                                                           >  1:1082408‑M1/62‑91 (MQ=255)

   gCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGa                                                                                         <  1:2697593/91‑1 (MQ=255)

   gCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGa                                                                                         <  1:2073460/91‑1 (MQ=255)

   gCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGa                                                                                         >  2:1533516/1‑91 (MQ=255)

     aaaGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGaaa                                                                                       <  2:3862660/91‑1 (MQ=255)

     aaaGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGaaa                                                                                       >  1:1257729/1‑91 (MQ=255)

         ttCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAgaga                                                                                   <  1:3665700/91‑1 (MQ=255)

         ttCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAgaga                                                                                   >  1:585767/1‑91 (MQ=255)

         ttCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAgaga                                                                                   <  1:1207857/91‑1 (MQ=255)

           catcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACa                                                                                 >  2:1157900/1‑91 (MQ=255)

            atcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaa                                                                                <  2:2941772/91‑1 (MQ=255)

            atcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaa                                                                                <  2:1234190/91‑1 (MQ=255)

             tcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaaa                                                                               >  1:1417826/1‑91 (MQ=255)

             tcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaaa                                                                               <  2:1787091/91‑1 (MQ=255)

             tcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaaa                                                                               >  2:2476317/1‑91 (MQ=255)

               acaAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACg                                                                             <  1:2786958/91‑1 (MQ=255)

                   gCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGAttt                                                                         <  1:2386810/91‑1 (MQ=255)

                   gCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGAttt                                                                         <  2:1185279/91‑1 (MQ=255)

                     atatTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTg                                                                       <  1:1990737/91‑1 (MQ=255)

                     atatTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTg                                                                       <  1:661455/91‑1 (MQ=255)

                     atatTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTg                                                                       >  2:3821913/1‑91 (MQ=255)

                      tattatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGt                                                                      >  2:895728/1‑91 (MQ=255)

                      tattatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGt                                                                      <  1:1133347/91‑1 (MQ=255)

                        ttatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTta                                                                    >  2:66319/1‑91 (MQ=255)

                        ttatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTta                                                                    >  2:3700211/1‑91 (MQ=255)

                        ttatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTta                                                                    >  1:2303544/1‑91 (MQ=255)

                         tatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTtat                                                                   <  1:357006/91‑1 (MQ=255)

                         tatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTtat                                                                   >  2:1627447/1‑91 (MQ=255)

                          atcatcTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTtata                                                                  >  2:177241/1‑91 (MQ=255)

                           tcatcTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTatat                                                                 <  2:2729045/91‑1 (MQ=255)

                            catcTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATg                                                                <  1:3774637/91‑1 (MQ=255)

                             atcTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGc                                                               <  1:3442954/91‑1 (MQ=255)

                                tctcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGt                                                            >  1:3038998/1‑91 (MQ=255)

                                tctcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGt                                                            <  1:161571/91‑1 (MQ=255)

                                tctcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGt                                                            >  2:2806497/1‑91 (MQ=255)

                                tctcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGt                                                            <  2:2493811/91‑1 (MQ=255)

                                 ctcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTa                                                           >  1:2152316/1‑91 (MQ=255)

                                 ctcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTa                                                           <  1:874187/91‑1 (MQ=255)

                                  tcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTaa                                                          <  1:1292625/91‑1 (MQ=255)

                                   cATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAAc                                                         >  2:3300432/1‑91 (MQ=255)

                                    aTTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACa                                                        <  1:318492/91‑1 (MQ=255)

                                    aTTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACa                                                        <  1:2929814/91‑1 (MQ=255)

                                        gAATTGTCGTAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTg                                                    <  1:3791579/91‑1 (MQ=255)

                                        gAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTg                                                    <  1:2273899/91‑1 (MQ=255)

                                          aTTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCa                                                  <  2:1705991/91‑1 (MQ=255)

                                           ttGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAg                                                 >  2:549266/1‑91 (MQ=255)

                                             gTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGt                                               >  1:1808312/1‑91 (MQ=255)

                                             gTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGt                                               >  1:1463376/1‑91 (MQ=255)

                                             gTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGt                                               >  2:1732299/1‑91 (MQ=255)

                                                  aaCAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCTGTAACAGGTGCAGGTAAGAc                                          >  2:171279/1‑91 (MQ=255)

                                                    cagcagTCTTATGCCTCAGAACCTATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAg                                        <  2:1575774/91‑1 (MQ=255)

                                                      gcagTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGaa                                      >  2:3613732/1‑91 (MQ=255)

                                                        agTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAat                                    <  1:2545597/91‑1 (MQ=255)

                                                        agTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAat                                    <  1:3928992/91‑1 (MQ=255)

                                                         gTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatg                                   >  1:3411114/1‑91 (MQ=255)

                                                         gTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCACAACAGGTGCTGGTAAGACAGAAatg                                   >  2:3418540/1‑91 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGGCATTAGAAAGAGACAAACGATTTTGTTATAGGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  <  2:7216/91‑1 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  <  1:7619/91‑1 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  >  1:2846062/1‑91 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  <  1:698364/91‑1 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  <  2:2969121/91‑1 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  <  2:1136918/91‑1 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  >  1:433672/1‑91 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  <  2:1384740/91‑1 (MQ=255)

                                                          tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  >  2:1204255/1‑91 (MQ=255)

                                                          tCTTATGCCGCAGAACATTTTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga                                  <  2:8089/91‑1 (MQ=255)

                                                              ATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGCTGCAGGTAAGACAGAAATGATGtt                              <  2:3848945‑M1/91‑1 (MQ=255)

                                                               TGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGttt                             <  2:3261856‑M1/91‑1 (MQ=255)

                                                               TGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGttt                             >  2:2010829‑M1/1‑91 (MQ=255)

                                                                ggctcgaacaatatgttctgaggcatTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTc                            >  2:3855216‑M2/27‑91 (MQ=255)

                                                                GCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTc                            <  2:255469‑M1/91‑1 (MQ=255)

                                                                 gctcgaacaatatgttctgaggcatTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCa                           >  1:2452695‑M2/26‑91 (MQ=255)

                                                                  ctcgaacaatatgttctgaggcatTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCaa                          >  1:468923‑M2/25‑91 (MQ=255)

                                                                  cTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCaa                          >  1:992656/1‑91 (MQ=255)

                                                                   tcgaacaatatgttctgaggcatTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAg                         >  2:1259915‑M2/24‑91 (MQ=255)

                                                                    cAGAACGTATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAgg                        <  2:215690/91‑1 (MQ=255)

                                                                    cAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAgg                        >  1:3244256/1‑91 (MQ=255)

                                                                     aGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGc                       <  1:1944113/91‑1 (MQ=255)

                                                                      gAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGTTGCAGGTAAGACAGAAATGATGTTTCAAGGCa                      <  1:628564/91‑1 (MQ=255)

                                                                      gAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGACGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCa                      >  2:3463466/1‑91 (MQ=255)

                                                                       agcATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCAt                     <  2:600093/89‑1 (MQ=255)

                                                                         cATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTc                   <  1:2942402/91‑1 (MQ=255)

                                                                         cATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTc                   <  2:1449622/91‑1 (MQ=255)

                                                                           tatTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCaa                 >  2:289315/1‑91 (MQ=255)

                                                                           tatTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCaa                 >  1:948838/1‑91 (MQ=255)

                                                                           tatTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCaa                 >  1:2648638/1‑91 (MQ=255)

                                                                            atTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAat                <  2:2171998/91‑1 (MQ=255)

                                                                              tGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAatat              <  2:2675883/91‑1 (MQ=255)

                                                                               tttCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGTAATGATGTTTCAAGGCATTCATTATg             <  2:650526/90‑1 (MQ=255)

                                                                                  cGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCaa          <  2:3592527/91‑1 (MQ=255)

                                                                                  cGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCaa          >  1:510501/1‑91 (MQ=255)

                                                                                   gAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAg         >  2:2519207/1‑91 (MQ=255)

                                                                                      ccATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAAt      <  1:1826656/91‑1 (MQ=255)

                                                                                      ccATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAAt      <  1:3095511/91‑1 (MQ=255)

                                                                                      ccATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAAt      >  1:2834559/1‑91 (MQ=255)

                                                                                          tAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAg  >  1:1753586/1‑91 (MQ=255)

                                                                                          tAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTCCAGGTAAGACAGAAATGATGTTTCAGGGCATTCAATATGCAAGAATACAg  >  2:3674364/1‑91 (MQ=255)

TTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAG  >  USA300TCH1516_ALE/828484‑828664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.