BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	828546 =	188 (0.920)	10 (0.050)	5/154	NT	5.5%	coding (98/1083 nt)	comFA	ComF operon protein 1
*	?	USA300TCH1516_ALE	828574 =	163 (0.830)	10 (0.050)	5/154	NT	5.5%	coding (126/1083 nt)	comFA	ComF operon protein 1

Only 100 of 240 total aligned reads displayed.

ATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTT  >  USA300TCH1516_ALE/828456‑828636

tgtattcttgcatattgaatgccttgaaacatcatttctgtcttacctgcacctgttacggcatataacaaaatcgtttgtctctttctaa                                                                                            <  2:1785218‑M1/1‑1 (MQ=255)

aTGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTa                                                                                            >  2:1307831/1‑91 (MQ=255)

 tGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTAt                                                                                           <  2:2678412/91‑1 (MQ=255)

 tGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTAt                                                                                           <  1:2466272/91‑1 (MQ=255)

 tGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTAt                                                                                           <  1:2006640/91‑1 (MQ=255)

 gtattcttgcatattgaatgccttgaaacatcatttctgtcttacctgcacctgttacggcatataacaaaatcgtttgtctctttctaAt                                                                                           >  1:950806‑M1/90‑91 (MQ=255)

  gTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATg                                                                                          <  2:2807371/91‑1 (MQ=255)

  gTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATg                                                                                          <  1:184798/91‑1 (MQ=255)

     aCAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCt                                                                                       >  1:2171998/1‑91 (MQ=255)

       aaGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCa                                                                                     <  2:1395357/91‑1 (MQ=255)

       aaGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCa                                                                                     >  1:2082998/1‑91 (MQ=255)

        aGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAg                                                                                    <  2:1213018/91‑1 (MQ=255)

         gATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGa                                                                                   <  1:1068176/91‑1 (MQ=255)

          atatAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGaa                                                                                  <  2:3745648/91‑1 (MQ=255)

          atatAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGaa                                                                                  <  2:1056891/91‑1 (MQ=255)

           tataAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAAc                                                                                 >  1:2231996/1‑91 (MQ=255)

            ataAAATAACAGAGAGTTCGCAAAGTTCGTCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACa                                                                                >  1:151754/1‑91 (MQ=255)

            ataAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACa                                                                                >  1:1807158/1‑91 (MQ=255)

            ataAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATAGTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACa                                                                                >  2:3242994/1‑91 (MQ=255)

             taAAATAACAGAGAGTTCGCAAAGTTCATTACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACat                                                                               <  1:3168037/91‑1 (MQ=255)

             taAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACat                                                                               <  2:3637134/91‑1 (MQ=255)

             taAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACat                                                                               <  2:1439202/91‑1 (MQ=255)

             taAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACat                                                                               <  1:1364493/91‑1 (MQ=255)

             taAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACat                                                                               <  2:1233426/91‑1 (MQ=255)

             taAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACat                                                                               <  1:2799578/91‑1 (MQ=255)

               aaaTAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACatat                                                                             >  1:1680066/1‑91 (MQ=255)

                  tAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGt                                                                          <  1:2072130/91‑1 (MQ=255)

                  tAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGt                                                                          >  1:334198/1‑91 (MQ=255)

                    aCAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTc                                                                        >  1:3726723/1‑91 (MQ=255)

                    aCAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTc                                                                        <  2:796471/91‑1 (MQ=255)

                     cAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCg                                                                       >  1:2103977/1‑91 (MQ=255)

                      agagagTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGa                                                                      >  2:248307/1‑91 (MQ=255)

                      agagagTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGa                                                                      >  1:3193257/1‑91 (MQ=255)

                       ttgaaacatcatttctgtcttacctgcacctgttacggcatataacaaaatcgtttgtctctttctaATGCCTCAGAACATATTGTTCGAg                                                                     >  1:468923‑M1/68‑91 (MQ=255)

                       gagagTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAg                                                                     >  1:3042141/1‑91 (MQ=255)

                        agagTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGc                                                                    <  1:2462697/91‑1 (MQ=255)

                         gaaacatcatttctgtcttacctgcacctgttacggcatataacaaaatcgtttgtctctttctaATGCCTCAGAACATATTGTTCGAGcc                                                                   >  2:3855276‑M1/66‑91 (MQ=255)

                          agTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCa                                                                  <  2:2794996/91‑1 (MQ=255)

                          agTTCGCAAAGTTCATCACAAGCATATTAGCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCa                                                                  <  2:1712206/91‑1 (MQ=255)

                           gTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCAt                                                                 >  2:3534688/1‑91 (MQ=255)

                           gTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCAt                                                                 >  1:1751759/1‑91 (MQ=255)

                            ttCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCAtt                                                                >  1:3178806/1‑91 (MQ=255)

                             tCGCAAAGTTCATCACAAGCATATTATCCTCTCTCATTTGAATTATCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTa                                                               >  2:318155/1‑91 (MQ=255)

                             tCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTa                                                               <  2:336979/91‑1 (MQ=255)

                             catcatttctgtcttacctgcacctgttacggcatataacaaaatcgtttgtctctttcttATGCCTCAGAACATATTGTTCGAGCCATTa                                                               >  1:1082408‑M1/62‑91 (MQ=255)

                              cGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAg                                                              <  1:408971/91‑1 (MQ=255)

                              cGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAg                                                              <  2:652044/91‑1 (MQ=255)

                               gCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGa                                                             <  1:2697593/91‑1 (MQ=255)

                                 aaaGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGaaa                                                           <  2:3862660/91‑1 (MQ=255)

                                  aaGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAag                                                          >  2:1512501/1‑91 (MQ=255)

                                    gTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAagag                                                        >  2:1732430/1‑91 (MQ=255)

                                     ttCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAgaga                                                       <  1:3665700/91‑1 (MQ=255)

                                       ctgcacaAGCATAGTATCGTCGCTCATTTGAATTGGCGGAACGGCAGTCTGATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACa                                                     <  2:1712931/88‑1 (MQ=255)

                                        atcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaa                                                    >  2:2500417/1‑91 (MQ=255)

                                        atcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaa                                                    <  2:2941772/91‑1 (MQ=255)

                                        atcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaa                                                    <  2:893729/91‑1 (MQ=255)

                                        atcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaa                                                    >  1:1236884/1‑91 (MQ=255)

                                        atcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaa                                                    <  1:671934/91‑1 (MQ=255)

                                         tcaCAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACaaa                                                   >  2:2476317/1‑91 (MQ=255)

                                          cacaAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAAc                                                  <  2:1252019/91‑1 (MQ=255)

                                           acaAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACg                                                 <  1:2786958/91‑1 (MQ=255)

                                               gCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGAttt                                             <  1:2386720/91‑1 (MQ=255)

                                                cATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGAtttt                                            <  1:1185650/91‑1 (MQ=255)

                                                 atatTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTg                                           <  1:661455/91‑1 (MQ=255)

                                                 atatTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTg                                           <  1:1990737/91‑1 (MQ=255)

                                                  tattatCATCTCTCATTTGAATTGTCGGAAAAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGACAGAGACAAACGATTTTGt                                          >  2:257340/1‑91 (MQ=255)

                                                   attatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGtt                                         >  2:3823729/1‑91 (MQ=255)

                                                     tatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTtat                                       <  1:357006/91‑1 (MQ=255)

                                                     tatCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTtat                                       >  2:1627447/1‑91 (MQ=255)

                                                       tcatcTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTatat                                     <  2:2729045/91‑1 (MQ=255)

                                                        catcTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATg                                    <  1:3774637/91‑1 (MQ=255)

                                                         atcTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGc                                   <  1:3442954/91‑1 (MQ=255)

                                                           ctctcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCg                                 <  1:541331/91‑1 (MQ=255)

                                                            tctcATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGt                                >  2:1154700/1‑91 (MQ=255)

                                                               cATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAAc                             <  1:2784105/91‑1 (MQ=255)

                                                                aTTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACa                            <  2:2160356/91‑1 (MQ=255)

                                                                aTTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACa                            <  1:2929854/91‑1 (MQ=255)

                                                                  ttGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAgg                          <  2:712175/91‑1 (MQ=255)

                                                                    gAATTGTCGTAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTg                        <  1:3791579/91‑1 (MQ=255)

                                                                    gAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTg                        <  1:2275260/91‑1 (MQ=255)

                                                                      aTTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCa                      <  2:3589610/91‑1 (MQ=255)

                                                                       ttGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAg                     >  2:3687573/1‑91 (MQ=255)

                                                                         gTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGCGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGt                   >  2:584939/1‑91 (MQ=255)

                                                                         gTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGt                   >  1:1808336/1‑91 (MQ=255)

                                                                          tCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTa                  <  1:2606583/91‑1 (MQ=255)

                                                                             gAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGa               >  1:1449271/1‑91 (MQ=255)

                                                                             gAACAGCAGTCTTAGGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGa               <  1:2447428/91‑1 (MQ=255)

                                                                                cagcagTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAg            <  2:1575759/91‑1 (MQ=255)

                                                                                  gcagTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGaa          >  2:2852924/1‑91 (MQ=255)

                                                                                  gcagTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATGTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGaa          <  2:1160508/91‑1 (MQ=255)

                                                                                   cagTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGaaa         >  2:469673/1‑91 (MQ=255)

                                                                                   cagTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGaaa         >  1:127244/1‑91 (MQ=255)

                                                                                     gTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatg       >  1:3411114/1‑91 (MQ=255)

                                                                                     gTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatg       >  1:593680/1‑91 (MQ=255)

                                                                                     gTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCACAACAGGTGCTGGTAAGACAGAAatg       >  2:3418540/1‑91 (MQ=255)

                                                                                      tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga      <  2:3009464/91‑1 (MQ=255)

                                                                                      tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga      >  2:1204255/1‑91 (MQ=255)

                                                                                      tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga      >  1:433672/1‑91 (MQ=255)

                                                                                      tCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAatga      <  1:7619/91‑1 (MQ=255)

                                                                                          ATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGtt  <  2:3848976‑M1/91‑1 (MQ=255)

ATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTT  >  USA300TCH1516_ALE/828456‑828636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.