| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 842626 | 186 (0.910) | 17 (0.090) | 7/144 | NT | 9.0% | intergenic (+12/‑650) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase |
| ? | USA300TCH1516_ALE | = 842653 | 175 (0.960) | intergenic (+39/‑623) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase | |||||
TATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/842530‑842626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaagCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATAC < USA300TCH1516_ALE/842653‑842563 TATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAGAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAA > 1:3352787/1‑91TATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAA > 1:3352909/1‑91 ATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAA < 2:1408051/91‑1 TTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAA > 2:3393264/1‑91 TTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAA > 2:1575852/1‑91 TTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAA > 2:1394951/1‑91 GCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGA > 1:2822796/1‑91 GCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGA > 2:2753297/1‑91 CTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAA < 2:3926377/91‑1 CTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAA > 2:285381/1‑91 TCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG < 2:3489139/91‑1 TCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG < 1:2145397/91‑1 TCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG < 1:116832/91‑1 CAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATAAATTTATAACA < 2:136293/91‑1 CAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATAAATTTATAACA < 2:136682/91‑1 AAGTATTGAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTT < 2:1177517/91‑1 TATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATAAATTTATAACATCCTTCAC < 1:3208482/91‑1 TATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC < 2:1178298/91‑1 TATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCAC < 2:2421117/91‑1 ataaAAAAGAAGTACTGGAACGAGAGAAAAAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACACCCTTCACT < 2:3319066/87‑1 TTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT < 2:3757149/91‑1 TTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT < 2:1974836/91‑1 TTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT < 2:1976013/91‑1 TTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTT < 2:2008208/91‑1 TTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTC < 1:2202990/91‑1 TTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTC < 1:2202966/91‑1 TTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTC < 1:2202954/91‑1 TTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTC < 1:1990476/91‑1 TTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTC < 1:1990447/91‑1 TTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATT < 1:821047/91‑1 AAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTT < 2:44782/91‑1 AAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTT > 2:2307644/1‑91 AAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTT > 2:2257292/1‑91 AAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTT < 1:1331570/91‑1 AAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTT > 1:557916/1‑91 AGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTA < 2:1643236/91‑1 AGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTA < 1:3758776/91‑1 AGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTA < 1:300871/91‑1 GAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAA < 2:912361/91‑1 GAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAA < 2:911518/91‑1 GAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAA < 2:591552/91‑1 AAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAA < 2:3081820/91‑1 AAGCGAAGGATAAATTTATAACATCATTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAA < 1:3671353/91‑1 AGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAAT < 2:2596131/91‑1 AGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAAT > 2:316945/1‑91 AGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATATTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAAT > 2:3468167/1‑91 AGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATATTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAAT > 2:3468191/1‑91 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA > 1:2296653/1‑91 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA < 1:1608977/91‑1 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA < 2:206544/91‑1 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA > 2:737209/1‑91 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA > 1:607520/1‑91 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATA < 2:206396/91‑1 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTG‑TTATCTCGTTCAAGTACTTCTTTTAAATAC > 1:3093056/1‑91 TATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/842530‑842626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaagCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATAC < USA300TCH1516_ALE/842653‑842563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |