BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 842626	186 (0.910)	17 (0.090)	7/144	NT	9.0%	intergenic (+12/‑650)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	= 842653	175 (0.960)	17 (0.090)	7/144	NT	9.0%	intergenic (+39/‑623)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase

Only 100 of 278 total aligned reads displayed.

GTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAA  >  USA300TCH1516_ALE/842563‑842743

gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                                                            >  2:2401239/1‑91 (MQ=255)

 tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                                                           >  1:2296653‑M2/1‑90 (MQ=255)

 tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                                                           <  1:1608977‑M2/91‑2 (MQ=255)

  aacataattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                                                          >  1:1235019‑M1/55‑91 (MQ=255)

  aacataattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                                                          >  2:673574‑M1/55‑91 (MQ=255)

  aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAATATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                                                          >  2:3468167‑M2/1‑89 (MQ=255)

  aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                                                          <  2:2596131‑M2/91‑3 (MQ=255)

   acataattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                                                         >  1:581344‑M1/54‑91 (MQ=255)

    ttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                        <  2:912361‑M2/91‑5 (MQ=255)

     tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                                                       <  1:300871‑M2/91‑6 (MQ=255)

     tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttct                                                                                       <  1:3758776‑M2/91‑6 (MQ=255)

      aaaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttctt                                                                                      <  1:1331570‑M2/91‑7 (MQ=255)

       aattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttt                                                                                     >  1:3798159‑M1/50‑91 (MQ=255)

       aaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttcttt                                                                                     >  2:2307644‑M2/1‑84 (MQ=255)

        attctttttacgcatcttatctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCtttt                                                                                    >  2:457367‑M1/49‑91 (MQ=255)

         agaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                                                                   >  1:2516125/1‑91 (MQ=255)

          gaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                                                  >  1:2914394/1‑91 (MQ=255)

            agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                >  1:1988549/1‑91 (MQ=255)

            agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                >  2:69642/1‑91 (MQ=255)

             gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                               >  1:2042923/1‑91 (MQ=255)

             gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                               >  2:1501653/1‑91 (MQ=255)

             gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                               >  1:3676763/1‑91 (MQ=255)

              tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                              <  1:3441306/91‑1 (MQ=255)

              tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                              <  1:1941162/91‑1 (MQ=255)

              tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                              >  1:3647581/1‑91 (MQ=255)

               aCTTGAACGAGATAAATAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                                                             <  2:3031156/91‑1 (MQ=255)

                cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                                                            >  2:142766/1‑91 (MQ=255)

                  tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTa                                                                          >  1:3945095/1‑91 (MQ=255)

                    aaCGAGAAAAACAAAATACTGAAGATAAATCAGATTAAAAGAAGTGAAGGGTGTTATAAATCTATCCTTCGCTTCTTTTTATTAATTTAGt                                                                        <  1:1597870/91‑1 (MQ=255)

                     aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                       <  2:2903430/91‑1 (MQ=255)

                        agaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                                                    <  2:2185163/91‑1 (MQ=255)

                        agaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                                                    <  1:620120/91‑1 (MQ=255)

                          aTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGaa                                                                  <  1:1765174/91‑1 (MQ=255)

                            aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGtata                                                                >  2:3863634/1‑91 (MQ=255)

                            aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAta                                                                >  2:2619579/1‑91 (MQ=255)

                            aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAta                                                                >  1:1880762/1‑91 (MQ=255)

                               cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                             <  2:2479472/91‑1 (MQ=255)

                               cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                             <  2:2110699/91‑1 (MQ=255)

                                aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                            <  1:2134015/91‑1 (MQ=255)

                                  aaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaa                                                          >  2:3239659/1‑91 (MQ=255)

                                    tACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaag                                                        <  2:25035/91‑1 (MQ=255)

                                    tACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATCAATTTAGTAATGAATAGTagaaag                                                        >  2:1311042/1‑91 (MQ=255)

                                     aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                       <  2:3058419/91‑1 (MQ=255)

                                      cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                                                      >  1:186834/1‑91 (MQ=255)

                                      cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTGTTATTAATTTAGTAATGAATAGTagaaagaa                                                      <  2:1593930/91‑1 (MQ=255)

                                        gAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                                                    >  2:10321/1‑91 (MQ=255)

                                        gAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                                                    >  1:2574253/1‑91 (MQ=255)

                                           gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt                                                 >  2:1846746/1‑91 (MQ=255)

                                             taaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc                                               >  1:2269314/1‑91 (MQ=255)

                                              aaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCg                                              >  2:1647165/1‑91 (MQ=255)

                                               aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaa                                             <  1:821047‑M2/91‑48 (MQ=255)

                                               aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                             >  1:2202569/1‑91 (MQ=255)

                                               aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                             <  2:35162/91‑1 (MQ=255)

                                                ataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTa                                            <  1:2682214/91‑1 (MQ=255)

                                                  aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                          <  1:1467603/91‑1 (MQ=255)

                                                   aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa                                         <  1:753929/91‑1 (MQ=255)

                                                   aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa                                         <  2:3398981/91‑1 (MQ=255)

                                                    gATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaaa                                        >  1:1553275/1‑91 (MQ=255)

                                                     aTTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAg                                       >  2:516716/1‑91 (MQ=255)

                                                       tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                     <  1:3486115/91‑1 (MQ=255)

                                                       cAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                     >  2:3923271‑M1/2‑91 (MQ=255)

                                                        AAAAGATGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt                                    >  2:473870‑M1/1‑91 (MQ=255)

                                                        AAAAGAAGTGAAGGGTGTTATAAATTTATCCTTCGCTTCTTTTTATTACTCTAGTAATGAATAGTAGAAAGGAAAGAGGCGTAAAAAgaag                                    <  2:3305322‑M1/91‑2 (MQ=255)

                                                         AAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAACGATGCGTAAAAAGAAtt                                   <  1:3382648‑M1/91‑1 (MQ=255)

                                                         AAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAtt                                   <  2:1285210‑M1/91‑1 (MQ=255)

                                                         AAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAtt                                   <  1:2248142‑M1/91‑1 (MQ=255)

                                                          AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGCATAGTAGAAAGAAAAGATGCGTAAAACGAATTa                                  <  2:1264891‑M1/91‑1 (MQ=255)

                                                            gaagTGAAGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttaa                                <  1:2202990‑M2/91‑61 (MQ=255)

                                                             aagTGAAGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttaaa                               <  2:1976013‑M2/91‑62 (MQ=255)

                                                             aagTGAAGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttaaa                               <  2:3757149‑M2/91‑62 (MQ=255)

                                                             AAGTGAAGGATGTTATAAATTTATCCTTCGCATCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGCAAAAAGAATTATGt                               <  1:322850‑M1/91‑1 (MQ=255)

                                                              AGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                              <  2:2471302‑M1/91‑1 (MQ=255)

                                                                 gAAGGATGTTATAAGTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAg                           >  1:1966016/1‑91 (MQ=255)

                                                                  aaGGATGTTATAAATTTATCCTTCGcttcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttcaatactt                          <  2:1177517‑M2/91‑67 (MQ=255)

                                                                   aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                         >  1:485427/1‑91 (MQ=255)

                                                                   aGGATGTTATAAATTTATCCTCCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                         >  2:186899/1‑91 (MQ=255)

                                                                    ggATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATa                        <  2:710629/91‑1 (MQ=255)

                                                                      aTGTTATAAATTTATCCTTCGCTTCTTTTTATTAGTTTAGTAATGAATAGTCGAAAGAGAAGATGCGTAAAAAGAATTATGTTAAGATAgg                      >  2:1934171/1‑91 (MQ=255)

                                                                       tGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAggg                     <  2:1611168/91‑1 (MQ=255)

                                                                       tGTTATAAATTTATCCTTCActtcttttaatcttatttatcttcagtattttgtttatctcgttcaagtacttcttttaaatactttcctg                     <  2:136293‑M2/91‑72 (MQ=255)

                                                                         ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTc                   <  1:981031/91‑1 (MQ=255)

                                                                           ataAATTTATCCTTCTCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                 <  2:3958870/91‑1 (MQ=255)

                                                                           ataAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                 >  2:2575976/1‑91 (MQ=255)

                                                                           ataAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                 >  2:2881130/1‑91 (MQ=255)

                                                                             aaaTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc               <  2:3603547/91‑1 (MQ=255)

                                                                             aaaTTGATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc               <  2:209457/91‑1 (MQ=255)

                                                                               aTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTa             >  1:2894090/1‑91 (MQ=255)

                                                                                tttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTag            <  1:1193747/91‑1 (MQ=255)

                                                                                 ttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga           <  2:2046964/91‑1 (MQ=255)

                                                                                 ttATCCTTCGCTTCTGTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga           <  2:803897/91‑1 (MQ=255)

                                                                                  tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGCTGCGTACAAAGCTTTATGTTAAGATAGGGTCAATCCagag          >  2:3622262/1‑91 (MQ=255)

                                                                                  tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag          >  1:2993641/1‑91 (MQ=255)

                                                                                   aTCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagt         >  1:3132558/1‑91 (MQ=255)

                                                                                    tCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta        >  2:3109927/1‑91 (MQ=255)

                                                                                    tCCTTCGATTCTTTTTATTAATTTAGTAATGAATAGAAGACAGAAAACATGCGTAAAAAGAATTATAGTAAGATAGAGTCAATCTAGagta        >  2:3675174/1‑91 (MQ=255)

                                                                                     ccTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagtag       <  1:3726989/91‑1 (MQ=255)

                                                                                       ttCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGtt     <  2:1807741/91‑1 (MQ=255)

                                                                                         cGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTaa   <  2:3428076/91‑1 (MQ=255)

                                                                                         cGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTaa   >  1:1002958/1‑91 (MQ=255)

                                                                                          gCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTaaa  >  1:139782/1‑91 (MQ=255)

GTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAA  >  USA300TCH1516_ALE/842563‑842743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.