| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 853007 | 177 (0.870) | 21 (0.110) | 9/148 | NT | 11.3% | intergenic (+14/+229) | clpP_1/USA300HOU_RS04170 | ATP‑dependent Clp protease proteolytic subunit/Epimerase family protein |
| ? | USA300TCH1516_ALE | = 853023 | 166 (0.880) | intergenic (+30/+213) | clpP_1/USA300HOU_RS04170 | ATP‑dependent Clp protease proteolytic subunit/Epimerase family protein | |||||
AGATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/852912‑853007‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagagCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTCTGC < USA300TCH1516_ALE/853023‑852934 AGATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTA < 2:1426340/91‑1 GATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAA > 1:3221076/1‑91 GATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAA > 1:794029/1‑91 GATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAA > 1:3629870/1‑91 GATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAA > 1:3629570/1‑91 GATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAA > 1:3628881/1‑91 GATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAA > 1:3220968/1‑91 GATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAA > 2:1020533/1‑91 GATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAA > 2:1019577/1‑91 ATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAA > 1:3065942/1‑91 ATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAA > 1:3066040/1‑91 ATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAA < 1:3193422/91‑1 ATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAA < 1:3193495/91‑1 GTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAG < 1:251417/91‑1 GTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAG > 1:2774910/1‑91 GTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAG < 2:3092122/91‑1 GATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCA < 1:843123/91‑1 AACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGT < 2:2573766/91‑1 TGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTA < 1:3771085/91‑1 TGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTA < 2:2907598/91‑1 TGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTA < 1:1782872/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGTAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 1:3422582/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGCAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 1:3422638/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 2:2182445/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 2:527873/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 1:827100/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 1:826736/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 1:3544559/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 1:3409709/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 1:1715312/91‑1 GCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTAC < 1:1470563/91‑1 AAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTACTCTT < 2:1999809/91‑1 AAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTACTCTT < 2:1999795/91‑1 AGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTACTCTTT < 2:1038833/91‑1 CTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAGATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTT < 2:1131856/91‑1 AAGAATATGGCTTAATTGATGAAGTGATGGTACCTTAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAA < 2:302363/91‑1 GAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTACTTTGAATTATTTTGTTTCAGGTACCA > 1:890123/1‑91 AAGTGATGGTACCGGAAACAAAATAATTCAGAGTAAAGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCAT < 2:1347342/91‑1 AAAGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCT < 2:2115211/91‑1 AAGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTT > 2:821588/1‑91 AAGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTT > 1:18392/1‑91 AGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCGGCAATTAAGCCATATTCTTTAGCTTCTTC < 1:1139072/91‑1 AGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTC < 1:3752038/91‑1 AGAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTC < 1:3354132/91‑1 GAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTCT > 1:96880/1‑91 GAGCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTCT > 1:1271658/1‑91 GCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTCTGC < 2:1610746/91‑1 GCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTCTGC < 2:1196399/91‑1 GCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTCTGC < 1:911154/91‑1 AGATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/852912‑853007‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagagCAGAC‑‑AGCTTAGTCTACTCTTTACTTTGAATTATTTTGTTTCAGGTACCATCACTTCATCAATTAAGCCATATTCTTTAGCTTCTTCTGC < USA300TCH1516_ALE/853023‑852934 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |