| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 853007 | 177 (0.870) | 21 (0.110) | 9/148 | NT | 11.3% | intergenic (+14/+229) | clpP_1/USA300HOU_RS04170 | ATP‑dependent Clp protease proteolytic subunit/Epimerase family protein |
| ? | USA300TCH1516_ALE | = 853023 | 166 (0.880) | intergenic (+30/+213) | clpP_1/USA300HOU_RS04170 | ATP‑dependent Clp protease proteolytic subunit/Epimerase family protein | |||||
Only 100 of 220 total aligned reads displayed.
TGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGTTGAACCGTA > USA300TCH1516_ALE/852933‑853112 | gCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGc < 2:1610746‑M2/91‑2 (MQ=255) gCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGc < 1:911154‑M2/91‑2 (MQ=255) agaagaAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGctc > 1:1271658‑M2/1‑88 (MQ=255) gaagCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCtttt > 2:2508736/1‑91 (MQ=255) gaagCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCtttt < 1:2083256/91‑1 (MQ=255) agCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTg < 2:1656075/91‑1 (MQ=255) agCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTg > 1:2136853/1‑91 (MQ=255) cTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTa < 2:958526/91‑1 (MQ=255) cTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTa > 2:20570/1‑91 (MQ=255) tAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTAt > 2:1226744/1‑91 (MQ=255) aaGAATCTGCCTCAACTCCTGAAGTGATGCTACCCGCAACACAATAACTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTATTGTacgc > 2:1070417/1‑88 (MQ=255) aaGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGa < 2:863691/91‑1 (MQ=255) aaGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGa > 1:49334/1‑91 (MQ=255) aaGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGa > 2:1799642/1‑91 (MQ=255) aaGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGa < 2:1469232/91‑1 (MQ=255) aGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAg < 2:2781865/91‑1 (MQ=255) gAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGt > 1:1528875/1‑91 (MQ=255) aaTATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTa < 1:165779/91‑1 (MQ=255) tatGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTaaa < 1:3766597/91‑1 (MQ=255) tatGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTaaa > 1:957505/1‑91 (MQ=255) tatGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTaaa < 2:2639208/91‑1 (MQ=255) tGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAAcc > 1:1627926/1‑91 (MQ=255) tGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAAcc < 2:2354840/91‑1 (MQ=255) ggCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCa < 2:1554572/91‑1 (MQ=255) ggCTTAATTGATGAAGGGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCa < 2:3626356/91‑1 (MQ=255) gCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCaa > 2:1116096/1‑91 (MQ=255) gCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCaa > 1:2051261/1‑91 (MQ=255) gCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCaa > 1:2197345/1‑91 (MQ=255) ttAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAgg < 1:257796/91‑1 (MQ=255) aTTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGgtgt < 1:1078715/91‑1 (MQ=255) aTTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGgtgt < 1:3145403/91‑1 (MQ=255) ttGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTc < 1:2298459/91‑1 (MQ=255) gatgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGACTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaa > 2:3047150/1‑91 (MQ=255) tgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaata < 1:3622888/91‑1 (MQ=255) tgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaata < 2:306567/91‑1 (MQ=255) tgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaata < 2:1054343/91‑1 (MQ=255) tgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaata > 2:948673/1‑91 (MQ=255) aaGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTGTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaataat < 1:3337545/91‑1 (MQ=255) aaGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaataat < 2:897515/91‑1 (MQ=255) aGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAACCCAAGGTGTCAATAAtt < 2:1025990/91‑1 (MQ=255) aGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAAtt > 2:415401/1‑91 (MQ=255) aGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAAtt < 1:935151/91‑1 (MQ=255) aGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACGAAGCTGTCTGCTCTTTTTGTATGAGTAGACCAAGGTGTCAATAAtt < 2:2988025/91‑1 (MQ=255) gATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGt > 1:506350/1‑91 (MQ=255) aTGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGctctttactctgaattattttgtttccggtaccatcactt < 2:1347342‑M2/91‑41 (MQ=255) aTGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGtt < 1:3019257/91‑1 (MQ=255) aTGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGtt > 1:2566868/1‑91 (MQ=255) tGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGttt < 1:2595106/91‑1 (MQ=255) ggTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTa > 2:3161090/1‑91 (MQ=255) ggTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTa > 1:1602422/1‑91 (MQ=255) gTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTAc > 2:1962315/1‑91 (MQ=255) ccTGATACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACtat < 2:3195961/91‑1 (MQ=255) ccTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACtat < 1:1922348/91‑1 (MQ=255) ccTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACtat > 2:450894/1‑91 (MQ=255) cTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACtata < 2:325250/91‑1 (MQ=255) cTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACtata > 1:2701780/1‑91 (MQ=255) aCAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTg > 1:565756/1‑91 (MQ=255) aaaTAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGc > 1:3548515/1‑91 (MQ=255) aataatTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCg > 2:344580/1‑91 (MQ=255) taatTCAACGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAGGGTGGCACTCATTTGTCTACTTTACTTTGAGCgca > 2:1201051/1‑89 (MQ=255) taatTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGa < 2:933046/91‑1 (MQ=255) ttCAAAGTAAAGAGTAGACTAAGCTGTCTGctctttactttgaattattttgtttaaggtaccatcacttcatcaattaagccatattctt < 2:302363‑M2/91‑62 (MQ=255) ttCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAat < 1:3770632/91‑1 (MQ=255) cAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAActat > 1:3552268/1‑91 (MQ=255) cAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAatat > 2:1999424/1‑91 (MQ=255) cAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAatat > 1:3958674/1‑91 (MQ=255) cAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAatat < 2:1787692/91‑1 (MQ=255) cAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGAATGAGTAAACCAATGTGTCAATAATTTGTTTACTATACTTTGAGCGGCAatat > 1:3681232/1‑91 (MQ=255) aaaGTAAAGAGTAGACTAAGCTGTCTGctctttactttgaattatcttgtttcaggtaccatcacttcatcaattaagccatattctttag < 2:1131856‑M2/91‑65 (MQ=255) aaGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGa < 2:2383883/91‑1 (MQ=255) tAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtg < 2:2925290/91‑1 (MQ=255) aaGAGTAGACTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttctt < 2:1999809‑M2/91‑71 (MQ=255) aaGAGCAGACTAAGCTGTGTGCTCTTTTTGTATGAGTCAACCAAGGCGTCAATAAGTTGTTTAGTATACTTTGAGCGGCAATATGATtgaa > 2:1342419/1‑91 (MQ=255) agagTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTACACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtgaat > 1:2893338/1‑91 (MQ=255) agagTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtgaat > 1:24089/1‑91 (MQ=255) agTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtgaatga > 1:2248211/1‑91 (MQ=255) gTAGACTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 2:527873‑M2/91‑75 (MQ=255) gTAGACTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 1:3409709‑M2/91‑75 (MQ=255) gTAGACTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 1:1715312‑M2/91‑75 (MQ=255) gTAGACTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 1:1470563‑M2/91‑75 (MQ=255) gTAGACTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 1:827100‑M2/91‑75 (MQ=255) gTAGACTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 2:2182445‑M2/91‑75 (MQ=255) gTAGACTAAGCTGTCTGctctttactttgaattattttgttgcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 1:3422638‑M2/91‑75 (MQ=255) gTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtgaatgaa < 2:3106980/91‑1 (MQ=255) gTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtgaatgaa < 2:737097/91‑1 (MQ=255) tAGACTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgca < 2:2907598‑M2/91‑76 (MQ=255) tAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAg < 2:3168591/91‑1 (MQ=255) tAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAg < 1:1788807/91‑1 (MQ=255) aCTAAGCTGTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgcagtt < 2:2573766‑M2/91‑79 (MQ=255) aCTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTa < 2:3791179/91‑1 (MQ=255) tAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGt < 1:373056/91‑1 (MQ=255) aaGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGtt < 2:3526683/91‑1 (MQ=255) aaGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGtt > 2:2809045/1‑91 (MQ=255) aGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGTTg < 2:501960/91‑1 (MQ=255) aGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTCGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGCTg > 2:2309247/1‑91 (MQ=255) cTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGTTGaa > 1:2801761/1‑91 (MQ=255) gTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGTTGAAct < 2:3736107/91‑2 (MQ=255) gTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGTTGAAcc > 2:2280303/1‑91 (MQ=255) gTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGTTGAAcc > 1:701406/1‑91 (MQ=255) tGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgcagttaagaagttatc < 1:843123‑M2/91‑90 (MQ=255) | TGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCTGTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAAGCTAGTTGAACCGTA > USA300TCH1516_ALE/852933‑853112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |