| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 853007 | 177 (0.870) | 21 (0.110) | 9/148 | NT | 11.3% | intergenic (+14/+229) | clpP_1/USA300HOU_RS04170 | ATP‑dependent Clp protease proteolytic subunit/Epimerase family protein |
| ? | USA300TCH1516_ALE | = 853023 | 166 (0.880) | intergenic (+30/+213) | clpP_1/USA300HOU_RS04170 | ATP‑dependent Clp protease proteolytic subunit/Epimerase family protein | |||||
Only 100 of 261 total aligned reads displayed.
GTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAA > USA300TCH1516_ALE/852917‑853097 | gTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAG < 1:251417‑M1/91‑1 (MQ=255) gATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGca < 1:843123‑M1/91‑3 (MQ=255) gATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTa > 2:2104763/1‑91 (MQ=255) aTAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAg > 2:393437/1‑91 (MQ=255) tAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGa > 2:1274122/1‑91 (MQ=255) tAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGa > 2:367366/1‑91 (MQ=255) tAACTGCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGa < 2:3203967/91‑1 (MQ=255) aaCTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGAc > 1:2892851/1‑91 (MQ=255) aCTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACt > 2:1703069/1‑91 (MQ=255) aCTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACt > 1:1945235/1‑91 (MQ=255) aCTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACt < 1:2750334/91‑1 (MQ=255) aCTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACt < 2:2960128/91‑1 (MQ=255) tAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑g > 1:101401/1‑91 (MQ=255) aCTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTc < 1:358606/91‑1 (MQ=255) aCTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTc > 2:938544/1‑91 (MQ=255) cTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCt < 2:638101/91‑1 (MQ=255) cTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCt < 2:3377490/91‑1 (MQ=255) cTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCt < 1:3144671/91‑1 (MQ=255) cTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCt < 1:1649746/91‑1 (MQ=255) tGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGcagacagcttagtcta < 1:3771085‑M1/91‑17 (MQ=255) tGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCCGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTg < 1:2230193/91‑1 (MQ=255) gCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGCAACAAAATAATTCAAAGTAAAGAGcagacagcttagtctac < 1:3422638‑M1/91‑18 (MQ=255) gCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGcagacagcttagtctac < 1:3544559‑M1/91‑18 (MQ=255) gCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGcagacagcttagtctac < 2:2182445‑M1/91‑18 (MQ=255) gCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGcagacagcttagtctac < 1:826736‑M1/91‑18 (MQ=255) gCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGcagacagcttagtctac < 1:827100‑M1/91‑18 (MQ=255) gCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGc < 2:1610746‑M2/91‑2 (MQ=255) agaagaAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGctc > 1:96880‑M2/1‑88 (MQ=255) gaagaaGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGctct < 1:3752038‑M2/91‑5 (MQ=255) aagaagCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGcagacagcttagtctactctt < 2:1999795‑M1/91‑22 (MQ=255) aagaagCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGctctt > 2:821588‑M2/1‑86 (MQ=255) aagaagCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGctctt > 1:18392‑M2/1‑86 (MQ=255) agaagCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGcagacagcttagtctactcttt < 2:1038833‑M1/91‑23 (MQ=255) ggagCTAGAGAATATGGTTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTTAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCtttt < 2:3154447/89‑1 (MQ=255) cTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAGATAATTCAAAGTAAAGAGcagacagcttagtctactctttacttt < 2:1131856‑M1/91‑28 (MQ=255) cTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTa < 2:958526/91‑1 (MQ=255) cTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTa > 1:2600236/1‑91 (MQ=255) aaGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGa > 1:49334/1‑91 (MQ=255) aaGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGa < 2:1930087/91‑1 (MQ=255) aaGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGa < 2:863691/91‑1 (MQ=255) aaGAATATGGCTAAATTGATGAAGTGCTCGTACCTGAAACAAACTAATTCAAAGTAAAGCGTAGACTAAGCT‑‑GTCTGCACTTTTTGTATGa > 2:2560910/1‑91 (MQ=255) aGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAg < 2:2781866/91‑1 (MQ=255) gAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGt < 2:2995526/91‑1 (MQ=255) aaTATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTa < 1:165779/91‑1 (MQ=255) tatGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTaaa < 2:2639208/91‑1 (MQ=255) tatGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTaaa > 1:957505/1‑91 (MQ=255) tGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAAcc < 2:1526167/91‑1 (MQ=255) tGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAAcc < 2:2354840/91‑1 (MQ=255) ggCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCa < 2:1554572/91‑1 (MQ=255) ggCTTAATTGATGAAGGGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCa < 2:3626356/91‑1 (MQ=255) gCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCaa > 1:2051261/1‑91 (MQ=255) ttAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAgg < 1:257796/91‑1 (MQ=255) aTTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGgtgt < 1:1493984/91‑1 (MQ=255) ttGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTc < 1:2298279/91‑1 (MQ=255) tgatgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCa > 1:2764858/1‑91 (MQ=255) gatgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaa > 2:3047181/1‑91 (MQ=255) tgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTTTTTGAGTAAACCATGCTGTCaata > 2:948502/1‑91 (MQ=255) tgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaata < 1:3622888/91‑1 (MQ=255) tgaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaata < 2:1054343/91‑1 (MQ=255) gaAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaataa > 2:2299191/1‑91 (MQ=255) aaGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCaataat < 2:899910/91‑1 (MQ=255) aaGTGATGGTACCGGAAACAAAATAATTCAGAGTAAAGAGcagacagcttagtctactctttactttgaattattttgtttcaggtaccat < 2:1347342‑M1/91‑52 (MQ=255) aGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAAtt < 1:935001/91‑1 (MQ=255) tGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTg < 2:1223474/91‑1 (MQ=255) gATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGt > 1:506350/1‑91 (MQ=255) aTGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGtt < 1:3019257/91‑1 (MQ=255) aTGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGtt < 1:3694012/91‑1 (MQ=255) tGGTACCTGAAACAAAATAATTCAAAGTAAAGAGCAGAC‑‑AGCTTAGTCTActctttactttgaattattttgtttcaggtaccatcacttc > 1:890123‑M2/1‑50 (MQ=255) ggTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTa > 2:1358751/1‑91 (MQ=255) ggTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTa > 1:1611785/1‑91 (MQ=255) ggTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTa > 1:1602422/1‑91 (MQ=255) gTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTAc > 2:1963045/1‑91 (MQ=255) aCCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACta < 2:1102219/91‑1 (MQ=255) ccTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACtat > 2:450894/1‑91 (MQ=255) aaaCAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTCTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACtt < 2:3046399/91‑1 (MQ=255) aaCAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACttt < 1:587031/91‑1 (MQ=255) cAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGa > 2:385007/1‑91 (MQ=255) aataatTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCg > 1:3208286/1‑91 (MQ=255) aataatTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCg > 2:344580/1‑91 (MQ=255) ataatTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTACACCAAGGTGTCAATAATTTGTTTACTATACTTCGAGCgc > 2:2408882/1‑90 (MQ=255) taatTCAACGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAGGGTGGCACTCATTTGTCTACTTTACTTTGAGCgca > 2:1201051/1‑89 (MQ=255) ttCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAat < 1:1312834/91‑1 (MQ=255) ttCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAat > 1:2124006/1‑91 (MQ=255) ttCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAat < 1:377025/91‑1 (MQ=255) cAAAGTAAAGAGTAGCCTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGCGGCAATAATTTGATTACTATACTTTGAGCGGAAatat > 2:2768906/1‑91 (MQ=255) cAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAgtat > 1:3551766/1‑91 (MQ=255) cAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAatat > 1:3958674/1‑91 (MQ=255) cAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAatat < 2:1787692/91‑1 (MQ=255) cAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAatat > 1:238804/1‑91 (MQ=255) gTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGAtt < 2:3088229/91‑1 (MQ=255) tAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtg < 2:2925272/91‑1 (MQ=255) aaGAGTAGACTAAGCT‑‑GTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttctt < 2:1999809‑M2/91‑71 (MQ=255) agagcagacagcttagtctactctttactttgaattattttgtttcaggtaccatcacttcggcaattaagccatattctttagcttcttc < 1:1139072‑M1/91‑88 (MQ=255) agagcagacagcttagtctactctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttc < 1:3354132‑M1/91‑88 (MQ=255) agagTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtgaat > 2:1151949/1‑91 (MQ=255) gagcagacagcttagtctactctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttct > 1:1271658‑M1/1‑3 (MQ=255) gagTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATtgaatg < 2:3166146/91‑1 (MQ=255) gTAGACTAAGCT‑‑GTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 1:3409709‑M2/91‑75 (MQ=255) gTAGACTAAGCT‑‑GTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 2:527873‑M2/91‑75 (MQ=255) gTAGACTAAGCT‑‑GTCTGctctttactttgaattattttgtttcaggtaccatcacttcatcaattaagccatattctttagcttcttctgc < 1:1715312‑M2/91‑75 (MQ=255) | GTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGATGAAGTGATGGTACCTGAAACAAAATAATTCAAAGTAAAGAGTAGACTAAGCT‑‑GTCTGCTCTTTTTGTATGAGTAAACCAAGGTGTCAATAATTTGTTTACTATACTTTGAGCGGAAATATGATTGAATGAA > USA300TCH1516_ALE/852917‑853097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |