| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 858374 = | 181 (0.890) | 11 (0.060) | 6/146 | NT | 6.5% | intergenic (+69/‑70) | gapA1/pgk | Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase |
| ? | USA300TCH1516_ALE | 858405 = | 151 (0.810) | intergenic (+100/‑39) | gapA1/pgk | Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase | |||||
TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/858470‑858374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCT > USA300TCH1516_ALE/858405‑858493 TAAATCAGAAACAATTTTTTTATTCTTGTTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCC > 2:975042/1‑91TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCC > 2:2821091/1‑91TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCC < 2:1013044/91‑1TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCC > 1:790060/1‑91 AAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCC < 1:2207823/91‑1 AAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCC > 2:1549635/1‑91 AATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCG < 2:1109367/91‑1 CAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTT > 2:358414/1‑91 CAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTT > 1:2483534/1‑91 CAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTT > 1:2708464/1‑91 AGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTA < 1:3886526/91‑1 GAAACAATTTTTTTAGCCATTGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTAT > 2:496013/1‑91 ATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAA > 1:892189/1‑91 ATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAT > 1:3234428/1‑91 ATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAT > 1:3234346/1‑91 ATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAT > 1:151103/1‑91 AAGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTG > 1:1217071/1‑91 AGCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGA > 1:2417843/1‑91 GCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAT > 1:2788390/1‑91 GCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAT > 1:2787578/1‑91 GCGGAGAAGCGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAT > 1:2787500/1‑91 CGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTT > 1:2425969/1‑91 CGTTTGTGCTCCCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTT > 1:2425061/1‑91 CCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACA > 1:1013924/1‑91 CCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACA > 2:449058/1‑91 CCGCTTATTTTTATATAAAATTTCATAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGCTTTAGATCTTAAAGGTAAAACA > 1:1013964/1‑91 CGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAG > 2:1240364/1‑91 GCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACGCCATGACTAATAAAATTGTTTCTGATTTAGATCTTAACGGTAAAACAGT < 2:276082/91‑1 CTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCT‑AAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCC < 1:287058/91‑1 CTTATTTTTATATAAAATGTCCTAATTACAAGGAGGAAACACAATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTC < 2:3830980/91‑1 TATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCT < 1:1816545/91‑1 TATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCT < 2:3318249/91‑1 TAAATCAGAAACAATTTTTTTAGCCATGGTGTTTCCTCCTTGTAATTAGGAAATTTTATATAAAAATAAGCGGAGAAGCGTTTGTGCTCCCCGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/858470‑858374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCT > USA300TCH1516_ALE/858405‑858493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |