BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	858374 =	181 (0.890)	11 (0.060)	6/146	NT	6.5%	intergenic (+69/‑70)	gapA1/pgk	Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase
*	?	USA300TCH1516_ALE	858405 =	151 (0.810)	11 (0.060)	6/146	NT	6.5%	intergenic (+100/‑39)	gapA1/pgk	Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase

Only 100 of 231 total aligned reads displayed.

CTTAGCTGAACTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCT  >  USA300TCH1516_ALE/858284‑858464

cTTAGCTGAACTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGt                                                                                            <  1:1394289/91‑1 (MQ=255)

cTTAGCTGAACTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGt                                                                                            >  2:2195109/1‑91 (MQ=255)

 ttAGCTGAACTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTa                                                                                           <  1:2736293/91‑1 (MQ=255)

 ttAGCTGAACTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTa                                                                                           <  2:2843042/91‑1 (MQ=255)

   gactgttttacctttaagatctaaatcagaaacaatttttttagccattgtgtttcctccttgtaattaggacattttatataaaaaTAAg                                                                                         <  2:3830980‑M1/4‑1 (MQ=255)

    gCTGAACTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGc                                                                                        >  2:2717019/1‑91 (MQ=255)

      tgttttacctttaagatctaaatcagaaacaatttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCgg                                                                                      >  2:449058‑M1/85‑91 (MQ=255)

      tgttttacctttaagatctaaagcagaaacaatttttttagccatggtgtttcctccttgtaattatgaaattttatataaaaaTAAGCgg                                                                                      >  1:1013964‑M1/85‑91 (MQ=255)

       gAACTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCggg                                                                                     >  1:772631/1‑91 (MQ=255)

        aaCTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCgggg                                                                                    <  2:326668/91‑1 (MQ=255)

         aCTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGa                                                                                   >  2:2347504/1‑91 (MQ=255)

          cTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAg                                                                                  <  2:3165087/91‑1 (MQ=255)

          cTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAg                                                                                  >  1:2658351/1‑91 (MQ=255)

            ttCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGca                                                                                <  1:648109/91‑1 (MQ=255)

            ttCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGca                                                                                <  1:647935/91‑1 (MQ=255)

             tCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGcac                                                                               >  2:2871791/1‑91 (MQ=255)

               tAAATAATTTTAGTGTAGGTTTTATTCAAATACGCGAGTGCTCAGCACTAGTCGGCAGTGATTAAAGCTTATCAGTAAGCGGGGAGCACaa                                                                             <  2:2746971/91‑1 (MQ=255)

               tAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACaa                                                                             <  2:2769941/91‑1 (MQ=255)

               tAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACaa                                                                             >  2:3197250/1‑91 (MQ=255)

                aaaTAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACaaa                                                                            <  1:1609991/91‑1 (MQ=255)

                 aataatTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCCGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAAc                                                                           >  2:1703602/1‑91 (MQ=255)

                  ataatTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACg                                                                          <  1:1374476/91‑1 (MQ=255)

                  aagatctaaatcagaaacaatttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACg                                                                          >  1:2425969‑M1/73‑91 (MQ=255)

                   taatTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGc                                                                         >  2:3222422/1‑91 (MQ=255)

                    aatTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCt                                                                        >  2:1188287/1‑91 (MQ=255)

                      ttttAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTtc                                                                      <  2:2055474/91‑1 (MQ=255)

                      ttttAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTtc                                                                      >  1:2652247/1‑91 (MQ=255)

                       tttAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTtct                                                                     <  2:885485/91‑1 (MQ=255)

                       tttAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTtct                                                                     >  1:3370743/1‑91 (MQ=255)

                        ttAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTtctc                                                                    <  1:1779440/91‑1 (MQ=255)

                          aGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCg                                                                  <  1:2054117/91‑1 (MQ=255)

                          aGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCg                                                                  <  1:1461582/91‑1 (MQ=255)

                          aGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCg                                                                  <  1:8170/91‑1 (MQ=255)

                           atcagaaacaatttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGc                                                                 >  1:2788390‑M1/64‑91 (MQ=255)

                           atcagaaacaatttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGc                                                                 >  1:2787500‑M1/64‑91 (MQ=255)

                            tcagaaacaatttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGCt                                                                >  1:2417843‑M1/63‑91 (MQ=255)

                            tataGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCt                                                                >  1:1349133/1‑91 (MQ=255)

                             ataGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCtt                                                               >  1:2093413/1‑91 (MQ=255)

                             ataGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCtt                                                               <  1:662507/91‑1 (MQ=255)

                              taGTTTTTATTCCAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGATTa                                                              >  1:3056843/1‑91 (MQ=255)

                                gTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTAtt                                                            >  2:3323793/1‑91 (MQ=255)

                                    ttATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTta                                                        >  2:508024/1‑91 (MQ=255)

                                     tATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                       <  1:2802283/91‑1 (MQ=255)

                                     tATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                       <  1:1211276/91‑1 (MQ=255)

                                     atttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                       >  1:3234428‑M1/54‑91 (MQ=255)

                                     atttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                       >  1:151103‑M1/54‑91 (MQ=255)

                                      aTTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtata                                                      <  1:2138434/91‑1 (MQ=255)

                                      aTTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtata                                                      <  1:2605954/91‑1 (MQ=255)

                                      aTTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtata                                                      <  1:3743019/91‑1 (MQ=255)

                                      aTTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtata                                                      >  2:2878549/1‑91 (MQ=255)

                                       ttCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatat                                                     >  1:1735590/1‑91 (MQ=255)

                                       ttCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTcatat                                                     >  2:1634960/1‑91 (MQ=255)

                                        tCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatata                                                    >  2:3104228/1‑91 (MQ=255)

                                         cAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaa                                                   <  1:474110/91‑1 (MQ=255)

                                         cAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaa                                                   >  1:1000855/1‑91 (MQ=255)

                                           aaTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaaaa                                                 <  2:2083820/91‑1 (MQ=255)

                                           aaTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaaaa                                                 <  1:413966/91‑1 (MQ=255)

                                            aTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAt                                                >  1:818900/1‑91 (MQ=255)

                                             tACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAtt                                               <  2:2623875/91‑1 (MQ=255)

                                             tACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTATCCGCTTATTTTTATATAAAAtt                                               <  2:2273375/91‑1 (MQ=255)

                                              aCGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAttt                                              <  1:2974019/91‑1 (MQ=255)

                                               cGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTc                                             >  1:1176284/1‑91 (MQ=255)

                                                 cTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCt                                           >  2:1375056/1‑91 (MQ=255)

                                                 cTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCt                                           >  1:3931612/1‑91 (MQ=255)

                                                   aGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTaa                                         >  1:3489339/1‑91 (MQ=255)

                                                   aGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTaa                                         >  2:3705970/1‑91 (MQ=255)

                                                   aGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTaa                                         >  1:1994020/1‑91 (MQ=255)

                                                    gTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAAt                                        <  1:2213976/91‑1 (MQ=255)

                                                         cAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACaa                                   >  2:3814432/1‑91 (MQ=255)

                                                         cAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACaa                                   >  1:289143/1‑91 (MQ=255)

                                                         cAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACaa                                   >  1:3002214/1‑91 (MQ=255)

                                                         cAGAACTATTTAGCATTAATTAAAGCTTAAGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACaa                                   >  2:3446627/1‑91 (MQ=255)

                                                              cTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAaggagg                              <  1:1905901/91‑1 (MQ=255)

                                                                aTTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGaa                            <  1:1803801/91‑1 (MQ=255)

                                                                    aGCATTAATTAAAGCTTATGAGTAAGCGGGGATCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAacac                        <  1:3366396/91‑1 (MQ=255)

                                                                    aGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAacac                        <  2:2145108/91‑1 (MQ=255)

                                                                      cATTAATTAAAGCTTATGAGTAAGAGGGGAGCACAAACGCTTCTCCGCTTGTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCa                      <  2:3670961/91‑1 (MQ=255)

                                                                        ttaattaaAGCTTATAAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATg                    <  2:3749878/91‑1 (MQ=255)

                                                                             taaAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaa               <  1:1141217/91‑1 (MQ=255)

                                                                               aaGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTGATTACAAGGAGGAAACACCATGGCTaaaa             >  1:3170688/1‑91 (MQ=255)

                                                                               aaGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaa             <  2:3040503/91‑1 (MQ=255)

                                                                               aaGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaa             >  1:3170828/1‑91 (MQ=255)

                                                                                aGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaa            >  1:3621186/1‑91 (MQ=255)

                                                                                aGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaa            <  2:3406822/91‑1 (MQ=255)

                                                                                aGCTTATGAGTAAGCGGGGAGCACAAACGCTTCCCCGCTTATTTTTATATAAAATTCCCTAATTACAAGGAGGATACACCCTTGCTaacac            >  2:665679/1‑88 (MQ=255)

                                                                                   ttATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt         >  1:2531040/1‑91 (MQ=255)

                                                                                   ttATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt         <  2:1436184/91‑1 (MQ=255)

                                                                                   ttATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATGTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt         <  2:1127289/91‑1 (MQ=255)

                                                                                    tATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTACTTACCAGGAGGAAACACCATGGCTAAAAAAAtt        >  2:1879874/1‑91 (MQ=255)

                                                                                    tATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAtt        <  2:3284627/91‑1 (MQ=255)

                                                                                    tATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAtt        <  2:1124462/91‑1 (MQ=255)

                                                                                      tGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGt      >  2:25334/1‑91 (MQ=255)

                                                                                      tGAGTAAGCGGGGAGCACAAACGCTTCTCCGCGTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGt      <  2:249403/91‑1 (MQ=255)

                                                                                       gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGCAACACCATGGCTAAAAAAATTGtt     >  2:1487277/1‑91 (MQ=255)

                                                                                       gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGACACACCATGGCTAAAAAAATTGtt     >  2:32462/1‑91 (MQ=255)

                                                                                       gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGtt     >  1:3913322/1‑91 (MQ=255)

                                                                                       gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGtt     >  2:3606403/1‑91 (MQ=255)

                                                                                       gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGtt     <  2:3077495/91‑1 (MQ=255)

                                                                                        aGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGttt    >  2:2918233/1‑91 (MQ=255)

                                                                                        aGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGttt    >  2:1893343/1‑91 (MQ=255)

CTTAGCTGAACTTTCTAAATAATTTTAGTATAGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCT  >  USA300TCH1516_ALE/858284‑858464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.