BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	858374 =	181 (0.890)	11 (0.060)	6/146	NT	6.5%	intergenic (+69/‑70)	gapA1/pgk	Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase
*	?	USA300TCH1516_ALE	858405 =	151 (0.810)	11 (0.060)	6/146	NT	6.5%	intergenic (+100/‑39)	gapA1/pgk	Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase

Only 100 of 212 total aligned reads displayed.

AGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCTAG  >  USA300TCH1516_ALE/858315‑858495

gaaacaatttttttagccattgtgtttcctccttgtaattaggaaattttatataaaaataagcggagaagcgtttgtgctccccgcttat                                                                                            >  2:496013‑M2/91‑91 (MQ=255)

aGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGAGGGGAGCACAAACGCTTCTCCGCTTAt                                                                                            >  2:1464905/1‑91 (MQ=255)

aGTTTTTATTCAAATACGCTAGTGCTCAGAACGATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAGCGCTTCTCCGCTTAt                                                                                            <  1:3368181/91‑1 (MQ=255)

 gTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTAtt                                                                                           >  2:3323793/1‑91 (MQ=255)

  tttttATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTAttt                                                                                          <  1:449370/91‑1 (MQ=255)

     ttATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTta                                                                                       >  2:508024/1‑91 (MQ=255)

      tATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                                                      <  1:2623652/91‑1 (MQ=255)

      tATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                                                      <  1:1211276/91‑1 (MQ=255)

      tATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                                                      <  1:2771498/91‑1 (MQ=255)

      tATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                                                      <  1:2802283/91‑1 (MQ=255)

      atttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                                                      >  1:151103‑M1/54‑91 (MQ=255)

       aTTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtata                                                                                     <  1:3229600/91‑1 (MQ=255)

        ttCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatat                                                                                    >  1:1735590/1‑91 (MQ=255)

         tCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatata                                                                                   >  2:3104228/1‑91 (MQ=255)

          cAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaa                                                                                  >  1:1000855/1‑91 (MQ=255)

            aaTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaaaa                                                                                <  2:2083820/91‑1 (MQ=255)

            aaTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaaaa                                                                                >  1:3014477/1‑91 (MQ=255)

             aTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAt                                                                               >  1:817176/1‑91 (MQ=255)

             aTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAt                                                                               <  2:286766/91‑1 (MQ=255)

              tACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAtt                                                                              <  2:3659771/91‑1 (MQ=255)

              tACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAtt                                                                              <  2:2623875/91‑1 (MQ=255)

               aCGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAttt                                                                             <  1:2974019/91‑1 (MQ=255)

                  cTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCt                                                                          >  1:3931612/1‑91 (MQ=255)

                    aGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTaa                                                                        >  1:3467764/1‑91 (MQ=255)

                    aGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTaa                                                                        <  1:3600223/91‑1 (MQ=255)

                    aGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTaa                                                                        >  2:3705970/1‑91 (MQ=255)

                     gTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAAt                                                                       <  1:1779557/91‑1 (MQ=255)

                     gTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAAt                                                                       <  1:2213976/91‑1 (MQ=255)

                          cAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACaa                                                                  >  1:2998241/1‑91 (MQ=255)

                          cAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACaa                                                                  >  2:3814432/1‑91 (MQ=255)

                          cAGAACTATTTAGCATTAATTAAAGCTTAAGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACaa                                                                  >  2:3446627/1‑91 (MQ=255)

                             aaCTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAagga                                                               >  1:3399705/1‑91 (MQ=255)

                               cTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAaggagg                                                             <  1:1905901/91‑1 (MQ=255)

                                     aGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAacac                                                       <  2:3072513/91‑1 (MQ=255)

                                     aGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAacac                                                       <  2:2145520/91‑1 (MQ=255)

                                     aGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAacac                                                       >  1:1186920/1‑91 (MQ=255)

                                      gCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACAcc                                                      >  2:2198447/1‑91 (MQ=255)

                                      gCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACAcc                                                      >  2:1636368/1‑91 (MQ=255)

                                            attaaAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCt                                                <  2:3229679/91‑1 (MQ=255)

                                              gaaaGCATATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaa                                              <  2:308157/90‑1 (MQ=255)

                                                aaGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTGATTACAAGGAGGAAACACCATGGCTaaaa                                            >  1:3170689/1‑91 (MQ=255)

                                                 aGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaa                                           <  2:3406822/91‑1 (MQ=255)

                                                  atataaaaataagcggagaagcgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaaa                                          >  1:892189‑M2/41‑91 (MQ=255)

                                                   cTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaaaa                                         <  1:1162575/91‑1 (MQ=255)

                                                   cTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaaaa                                         <  1:742916/91‑1 (MQ=255)

                                                   cTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaaaa                                         <  2:899336/91‑1 (MQ=255)

                                                   cTTACGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaaaa                                         >  1:3122455/1‑91 (MQ=255)

                                                    ttATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt                                        <  2:1436159/91‑1 (MQ=255)

                                                    ttATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt                                        >  1:2531040/1‑91 (MQ=255)

                                                    ttATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATGTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt                                        <  2:1127289/91‑1 (MQ=255)

                                                    ataaaaataagcggagaagcgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt                                        >  1:3234428‑M2/39‑91 (MQ=255)

                                                    ataaaaataagcggagaagcgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt                                        >  1:3234346‑M2/39‑91 (MQ=255)

                                                     tATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTACTTACCAGGAGGAAACACCATGGCTAAAAAAAtt                                       >  2:1879874/1‑91 (MQ=255)

                                                     tATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAtt                                       <  2:3284627/91‑1 (MQ=255)

                                                      aTGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTg                                      <  1:3642143/91‑1 (MQ=255)

                                                       tGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGt                                     >  2:25334/1‑91 (MQ=255)

                                                        gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGCAACACCATGGCTAAAAAAATTGtt                                    >  2:1487277/1‑91 (MQ=255)

                                                        gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGtt                                    >  2:3003807/1‑91 (MQ=255)

                                                        gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGtt                                    >  1:3913322/1‑91 (MQ=255)

                                                        gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGtt                                    <  2:2517265/91‑1 (MQ=255)

                                                         aGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGttt                                   >  2:2918233/1‑91 (MQ=255)

                                                         aGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGttt                                   >  2:1893343/1‑91 (MQ=255)

                                                          gTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTc                                  >  1:2287981/1‑91 (MQ=255)

                                                           TAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCt                                 <  1:3886526‑M1/91‑1 (MQ=255)

                                                            AAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTg                                >  2:358414‑M1/1‑91 (MQ=255)

                                                            AAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTg                                >  1:2483534‑M1/1‑91 (MQ=255)

                                                            AAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTg                                >  1:2708464‑M1/1‑91 (MQ=255)

                                                              gcggagaagcgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAt                              >  1:2787578‑M2/29‑91 (MQ=255)

                                                               CGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAtt                             <  2:1109367‑M1/91‑1 (MQ=255)

                                                                GGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAttt                            <  1:2207823‑M1/91‑1 (MQ=255)

                                                                 GGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTa                           >  2:2821091‑M1/1‑91 (MQ=255)

                                                                  ggAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAg                          <  1:138785/91‑1 (MQ=255)

                                                                  ggAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAg                          <  1:1511848/91‑1 (MQ=255)

                                                                   gAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGa                         >  1:1262251/1‑91 (MQ=255)

                                                                    aGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTACAAAAATTGTTTCTGATTTAGAt                        >  2:3190027/1‑91 (MQ=255)

                                                                       cgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCtt                     >  1:2425061‑M2/20‑91 (MQ=255)

                                                                       acaAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCtt                     >  2:1680566/1‑91 (MQ=255)

                                                                       acaAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCtt                     >  2:3655658/1‑91 (MQ=255)

                                                                       acaAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCtt                     >  2:729758/1‑91 (MQ=255)

                                                                            cGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAgg                >  2:3807223/1‑91 (MQ=255)

                                                                            cGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAgg                >  1:1714105/1‑91 (MQ=255)

                                                                            cGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAgg                >  2:1347064/1‑91 (MQ=255)

                                                                             gCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACAAAAAATAAAAAAATTGTTTCTGATTTAGATCTTAAAGGt               <  2:239928/91‑1 (MQ=255)

                                                                              cTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTa              <  1:835808/91‑1 (MQ=255)

                                                                              cTTCTCCGCTTATTCTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTa              >  1:1054533/1‑91 (MQ=255)

                                                                               ttCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTaa             >  1:1560998/1‑91 (MQ=255)

                                                                               ttCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTaa             >  1:3696048/1‑91 (MQ=255)

                                                                                tctcCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTaaa            >  1:332892/1‑91 (MQ=255)

                                                                                 ctcCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTaaaa           >  1:530026/1‑91 (MQ=255)

                                                                                 ctcCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTaaaa           >  1:1350328/1‑91 (MQ=255)

                                                                                  tcCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAAc          <  2:1599032/91‑1 (MQ=255)

                                                                                  tcCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAAc          >  1:2088238/1‑91 (MQ=255)

                                                                                   ccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACa         >  2:449058‑M2/8‑91 (MQ=255)

                                                                                   ccgcttaTTTTTATATAAAATTTCATAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGCTTTAGATCTTAAAGGTAAAACa         >  1:1013964‑M2/8‑91 (MQ=255)

                                                                                    cgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAg        >  2:1240364‑M2/7‑91 (MQ=255)

                                                                                      cttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCT‑AAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTcc     <  1:287058‑M2/87‑1 (MQ=255)

                                                                                      cttaTTTTTATATAAAATGTCCTAATTACAAGGAGGAAACACAATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTc      <  2:3830980‑M2/87‑1 (MQ=255)

                                                                                        taTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCt    <  1:1816545‑M2/89‑1 (MQ=255)

                                                                                          tttttATATAAAATTTCCTAATTACGAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCTAg  <  2:2464039/91‑1 (MQ=255)

                                                                                          tttttATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCTAg  >  1:2002447/1‑91 (MQ=255)

AGTTTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCTAG  >  USA300TCH1516_ALE/858315‑858495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.