| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 868310 | 146 (0.720) | 19 (0.100) | 8/148 | NT | 11.7% | coding (458/465 nt) | smpB | SsrA‑binding protein |
| ? | USA300TCH1516_ALE | = 868335 | 153 (0.810) | intergenic (+18/+1304) | smpB/USA300HOU_RS04240 | SsrA‑binding protein/hypothetical protein | |||||
ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/868215‑868310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccg‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < USA300TCH1516_ALE/868335‑868246 ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAA > 1:429021/1‑91 CTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAG < 2:2030609/91‑1 CTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAG > 2:1498597/1‑91 TTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGC > 2:31435/1‑91 TGGTGTTGCGCGAGGTAAGGAAAAATATGATAAACGTCAGGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCC < 2:3581021/91‑1 TGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCC > 2:3585061/1‑91 TGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCC > 1:341631/1‑91 GTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG > 2:2345609/1‑91 AAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCG < 1:2347817/91‑1 AAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCG < 1:427244/91‑1 AAATATGATAAGCGTCAAGCGTTGAAAGAAAAAGCGGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTT < 2:1863878/91‑1 AAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCGC < 1:1090426/91‑1 AAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTT < 2:3366995/91‑1 AAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTT < 1:1646869/91‑1 AAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTT < 1:1647175/91‑1 AATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCGCT < 1:3069079/91‑1 ATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCGCTT < 2:617732/91‑1 ATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAA < 1:3518616/91‑1 ATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAA < 2:26926/91‑1 ATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAA < 1:922465/91‑1 ATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAA < 1:922494/91‑1 ATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAA < 1:1368938/91‑1 aATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCGCTTA < 1:1700362/90‑1 TGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAA < 1:399297/91‑1 GATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAAC < 2:477668/91‑1 GATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAAC < 2:2449697/91‑1 AAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGG < 1:2479439/91‑1 AGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACaa < 2:3184881/91‑3 AGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGT > 1:2371073/1‑91 AGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGT > 2:35095/1‑91 AGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTCTCATCTCGCGCGCAACATCTCGTTCGACTGCTTCTTCTTTCAACGCTTCACGT > 2:34925/1‑91 GCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTT > 2:53251/1‑91 CCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTT < 1:427673/91‑1 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAATCTTGACGTTTA < 2:1106245/91‑1 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTA < 2:1899838/91‑1 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTA > 1:1081746/1‑91 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTA > 1:399238/1‑91 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTA > 1:3453095/1‑91 CG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTAT > 1:3704592/1‑91 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTTGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:3324882/91‑1 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:3324771/91‑1 ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/868215‑868310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccg‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < USA300TCH1516_ALE/868335‑868246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |