BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 868310	146 (0.720)	19 (0.100)	8/148	NT	11.7%	coding (458/465 nt)	smpB	SsrA‑binding protein
*	?	USA300TCH1516_ALE	= 868335	153 (0.810)	19 (0.100)	8/148	NT	11.7%	intergenic (+18/+1304)	smpB/USA300HOU_RS04240	SsrA‑binding protein/hypothetical protein

Only 100 of 223 total aligned reads displayed.

GTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTA  >  USA300TCH1516_ALE/868220‑868400

gtgtTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG                                                                                            >  2:2345609‑M1/1‑91 (MQ=255)

  gtTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGtt                                                                                          <  1:3859389/91‑1 (MQ=255)

  gtTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGtt                                                                                          >  1:1709919/1‑91 (MQ=255)

   ttGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAATAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGtta                                                                                         <  2:3054663/91‑1 (MQ=255)

   ttGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGtta                                                                                         >  1:230058/1‑91 (MQ=255)

   ttGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGtta                                                                                         <  1:2091141/91‑1 (MQ=255)

     gCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCCAACGAGATGTTGCGCGCGATATGAAAGCCCGttatt                                                                                       >  2:3118709/1‑91 (MQ=255)

     gCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttatt                                                                                       >  1:3921844/1‑91 (MQ=255)

     gCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttatt                                                                                       <  1:3159879/91‑1 (MQ=255)

      cACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttatta                                                                                      <  2:1871370/91‑1 (MQ=255)

      cACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttatta                                                                                      <  2:1060230/91‑1 (MQ=255)

       aCGAGGTCAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTaa                                                                                     <  1:1958038/91‑1 (MQ=255)

          aGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAcgcg                                                                                  >  1:339244/1‑91 (MQ=255)

          aGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCg                                                                                  >  2:2815627/1‑91 (MQ=255)

          aGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCg                                                                                  <  1:2704279/91‑1 (MQ=255)

            gTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                                <  1:1137582/91‑1 (MQ=255)

              aaGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAttt                                                                              >  2:2096845/1‑91 (MQ=255)

               aGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTa                                                                             >  1:1585883/1‑91 (MQ=255)

                gAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAg                                                                            <  2:2515772/91‑1 (MQ=255)

                 aaaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGt                                                                           >  1:2945666/1‑91 (MQ=255)

                 aaaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGt                                                                           <  2:418922/91‑1 (MQ=255)

                   aaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGACAGCCCGTTATTAAGCGATTTAGTTg                                                                         >  1:3669128/1‑91 (MQ=255)

                   aaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttattaagcaactaaatcg                                                                         <  1:2347817‑M1/91‑20 (MQ=255)

                   aaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTg                                                                         <  2:3224581/91‑1 (MQ=255)

                    aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgctt                                                                        <  1:1647175‑M1/91‑21 (MQ=255)

                    aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                        <  1:701475/91‑1 (MQ=255)

                     aaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttattaagcaactaaatcgct                                                                       <  1:3069079‑M1/91‑22 (MQ=255)

                      atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaa                                                                      <  2:26926‑M1/91‑23 (MQ=255)

                      atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaa                                                                      <  1:922465‑M1/91‑23 (MQ=255)

                      atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaa                                                                      <  1:3518616‑M1/91‑23 (MQ=255)

                      atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaa                                                                      <  1:1368938‑M1/91‑23 (MQ=255)

                      atatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCtt                                                                      <  2:3096234/91‑1 (MQ=255)

                          gATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaataac                                                                  <  2:2449697‑M1/91‑27 (MQ=255)

                           aTAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcg                                                                 >  1:3704592‑M2/1‑89 (MQ=255)

                            tAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcgg                                                                >  1:1081746‑M2/1‑88 (MQ=255)

                            tAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcgg                                                                <  2:1899838‑M2/91‑4 (MQ=255)

                              aaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcgggc                                                              >  2:53251‑M2/1‑86 (MQ=255)

                               aCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcgggct                                                             >  2:35095‑M2/1‑85 (MQ=255)

                                cGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCta                                                            >  2:841937/1‑91 (MQ=255)

                                  tCAAGCTTTTAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCtata                                                          <  1:3778397/91‑1 (MQ=255)

                                  tCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCtata                                                          <  2:3336006/91‑1 (MQ=255)

                                     aGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATAttt                                                       >  1:791136/1‑91 (MQ=255)

                                      gCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTg                                                      <  2:3503165/91‑1 (MQ=255)

                                      gCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTACTTAATCGGGCTATATTTg                                                      <  2:1689877/91‑1 (MQ=255)

                                        tttGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGat                                                    >  2:2497282/1‑91 (MQ=255)

                                            aaagaaaAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAg                                                >  1:3874747/1‑91 (MQ=255)

                                            aaagaaaAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAg                                                >  2:1256040/1‑91 (MQ=255)

                                               gaaaAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTta                                             <  2:3282188/91‑1 (MQ=255)

                                               gaaaAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTta                                             >  2:3027751/1‑91 (MQ=255)

                                                  aaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTatat                                          <  2:663859/91‑1 (MQ=255)

                                                   aaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATAtg                                         >  2:2640278/1‑91 (MQ=255)

                                                   aaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATAtg                                         >  1:594567/1‑91 (MQ=255)

                                                      cAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGc                                      >  2:620488/1‑91 (MQ=255)

                                                      cAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGc                                      >  1:2172912/1‑91 (MQ=255)

                                                       aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                                     >  2:316658/1‑91 (MQ=255)

                                                       aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                                     >  2:1971663/1‑91 (MQ=255)

                                                        gTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCtt                                    >  2:493286/1‑91 (MQ=255)

                                                         tCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCttt                                   <  1:1047577/91‑1 (MQ=255)

                                                         tCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCttt                                   <  2:1862620/91‑1 (MQ=255)

                                                         tCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCttt                                   <  1:506760/91‑1 (MQ=255)

                                                         tCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCttt                                   <  2:592863/91‑1 (MQ=255)

                                                           aaaCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTg                                 >  2:2984084/1‑91 (MQ=255)

                                                              cGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTaa                              >  1:1033059/1‑91 (MQ=255)

                                                                agaTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAAt                            >  1:150817/1‑91 (MQ=255)

                                                                  ctGTTGCGCGCCATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCACTATATGATATAGTTATATGTGCTTTTGTAAATTa                          <  2:179333/90‑1 (MQ=255)

                                                                  aTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTa                          >  1:2382571/1‑91 (MQ=255)

                                                                  aTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTa                          >  2:2996452/1‑91 (MQ=255)

                                                                   tGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTAc                         >  1:44458/1‑91 (MQ=255)

                                                                    gTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAATTTACa                        <  1:229183/91‑1 (MQ=255)

                                                                    gTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACa                        >  2:3938381/1‑91 (MQ=255)

                                                                    gTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACa                        >  2:472888/1‑91 (MQ=255)

                                                                    gTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACa                        >  2:528198/1‑91 (MQ=255)

                                                                    gTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACa                        >  2:919790/1‑91 (MQ=255)

                                                                     ttGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaa                       <  2:1670880/91‑1 (MQ=255)

                                                                     ttGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaa                       <  2:1250853/91‑1 (MQ=255)

                                                                      tGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaaa                      >  1:1272728/1‑91 (MQ=255)

                                                                       gcgcgcGATATGAAAGCCCGTTATTGAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaaaa                     <  2:1364091/91‑1 (MQ=255)

                                                                        cgcgcgATATGAATGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAATTTACAAAAg                    <  2:3558585/91‑1 (MQ=255)

                                                                            cgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATg                <  1:1719369/91‑1 (MQ=255)

                                                                              atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAt              <  2:3457748/91‑1 (MQ=255)

                                                                               tatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtt             <  1:415210/91‑1 (MQ=255)

                                                                                atGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAACGTATGAttt            >  2:45151/1‑91 (MQ=255)

                                                                                atGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAttt            <  1:2437399/91‑1 (MQ=255)

                                                                                  gAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtttgt          <  2:2875100/91‑1 (MQ=255)

                                                                                   aaaGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtttgtt         >  2:1176263/1‑91 (MQ=255)

                                                                                     aGCCCGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgt       >  1:2371073‑M1/1‑6 (MQ=255)

                                                                                      gCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGa      >  2:3749165/1‑91 (MQ=255)

                                                                                       cccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttt     <  1:427673‑M1/91‑88 (MQ=255)

                                                                                       cccGTTATTAAGCGATTTAGTTGCTTAATcgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttt     <  1:2479439‑M2/91‑63 (MQ=255)

                                                                                       cccGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGAt     >  2:2309134/1‑91 (MQ=255)

                                                                                       cccGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGAt     <  1:3603945/91‑1 (MQ=255)

                                                                                        ccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaatcttgacgttta    <  2:1106245‑M1/91‑89 (MQ=255)

                                                                                        ccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttta    >  1:3453095‑M1/1‑3 (MQ=255)

                                                                                        ccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttta    >  1:399238‑M1/1‑3 (MQ=255)

                                                                                         cGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGAttt   <  2:2017327/91‑1 (MQ=255)

                                                                                          gattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatcttgtttgactgctttttctttcaaagcttgacgtttatc  <  1:3324882‑M1/91‑91 (MQ=255)

                                                                                          gattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttatc  <  1:3324771‑M1/91‑91 (MQ=255)

                                                                                          gTTATTAAGCGATTTAGTTGCTTGTTCGGGCTATATTTGATATAGTTATAGGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATtta  <  2:3675986/91‑1 (MQ=255)

                                                                                          gTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATtta  >  1:289380/1‑91 (MQ=255)

                                                                                          gTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATtta  >  1:1804462/1‑91 (MQ=255)

GTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTA  >  USA300TCH1516_ALE/868220‑868400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.