| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 893187 | 176 (0.860) | 13 (0.080) | 9/136 | NT | 7.9% | intergenic (+188/‑62) | trxA_1/metN2 | Thioredoxin/Methionine import ATP‑binding protein MetN 2 |
| ? | USA300TCH1516_ALE | = 893199 | 155 (0.900) | intergenic (+200/‑50) | trxA_1/metN2 | Thioredoxin/Methionine import ATP‑binding protein MetN 2 | |||||
CCTACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/893086‑893187‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctttctcaatATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTCTATAT < USA300TCH1516_ALE/893199‑893110 CCTACGAAGCCCGGCAACCGTCTTATATAGAATTGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGGAACAATACTACTATT < 1:3371102/91‑1 CTACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGGGAAACAATACTACTATTG < 1:1625396/91‑1 CTACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTG < 1:1498755/91‑1 CTACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTG > 2:3000939/1‑91 TACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGC > 2:237902/1‑91 ACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCT < 1:2036989/91‑1 ACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCT > 2:2034568/1‑91 CGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTT < 2:2643067/91‑1 GAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTT < 2:3310801/91‑1 GAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTT < 1:856298/91‑1 AAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTC < 2:474108/91‑1 AAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTC < 2:3255168/91‑1 AAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTC < 1:2075869/91‑1 AAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTC < 2:1274200/91‑1 AGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCT < 2:343140/91‑1 AGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCT > 2:2638988/1‑91 AGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCT < 2:784584/91‑1 GCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTC > 2:3085627/1‑91 GCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTC > 1:3382005/1‑91 GCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTC > 1:3735399/1‑91 CCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCA > 1:2524590/1‑91 CCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCA > 2:3793460/1‑91 CCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAA > 2:736840/1‑91 CCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAA < 2:1820322/91‑1 CGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAAT > 1:167414/1‑91 CGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAAT > 1:1787810/1‑91 TATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAA < 2:1874619/91‑1 TATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATAAATAAAAAA < 2:3477189/91‑1 ATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAA < 2:2776124/91‑1 ATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAA < 2:2889621/91‑1 ATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAA < 2:1127875/91‑1 ATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAA < 1:3196777/91‑1 TATAGAAATGGTGCCAATTCACATGAAGTTTTAACTTTTGAAGATGAGAGGAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAAT < 2:3670674/91‑1 ATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAATT < 1:1692265/91‑1 TAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAATTG < 2:3943217/91‑1 AAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAATTGAGA < 1:688743/91‑1 TGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAATTGAGAAAG < 2:2809779/91‑1 CACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTA < 1:2218613/91‑1 CATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATT < 1:2113739/91‑1 TGCTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCAC > 1:833955/1‑91 TGCTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCAC < 2:2251651/91‑1 GCTTTCTCAATATCGATAGCAACATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCACAAGTTAAAACTTTATGTGAATTGGCACC > 2:1301457/1‑91 GCTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACC > 2:1532057/1‑91 GCTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACC > 2:3948710/1‑91 GCTTTCACAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGTACC > 1:3070311/1‑91 CTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCA < 1:164572/91‑1 CTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCA < 1:2284059/91‑1 CTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCA < 1:813872/91‑1 CTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCA < 1:229209/91‑1 CTTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCA > 2:128842/1‑91 TTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCAT > 1:1838854/1‑91 TTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCAT > 1:2452385/1‑91 TTTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCAT > 1:2173630/1‑91 TTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATT < 1:416859/91‑1 TTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATT < 2:3036126/91‑1 TTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATT < 1:2461408/91‑1 TTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATT > 2:3681726/1‑91 TTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATT < 1:2462141/91‑1 TTCTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTACTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATT > 2:3549140/1‑91 CTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTC < 1:3775901/91‑1 CTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTC > 1:3127542/1‑91 CTCAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTC > 1:538758/1‑91 CAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTCTA > 2:1523777/1‑91 CAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTCTA < 1:664893/91‑1 CAATATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTCTA > 1:2990870/1‑91 TATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTCTATAT < 1:677444/91‑1 TATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTCTATAT < 1:2038696/91‑1 CCTACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/893086‑893187‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctttctcaatATCGATAGAAAAATTGAGAAAGCAATAGTAGTATTGTTTCTCTCATCTTCAAAAGTTAAAACTTTATGTGAATTGGCACCATTTCTATAT < USA300TCH1516_ALE/893199‑893110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |