| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 906243 = | 220 (1.080) | 17 (0.090) | 7/148 | NT | 7.9% | intergenic (+27/‑157) | USA300HOU_RS04485/USA300HOU_RS04490 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 906294 = | 191 (1.010) | intergenic (+78/‑106) | USA300HOU_RS04485/USA300HOU_RS04490 | hypothetical protein/hypothetical protein | |||||
AGTTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/906338‑906243‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggcCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT > USA300TCH1516_ALE/906294‑906383 AGTTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAG > 1:2174774/1‑91AGTTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAG < 1:184523/91‑1AGTTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAACGGCCCCCGCCGGTACCCGGCGAAAAAACATTCTAAGCCGATGGCCAG > 2:3846865/1‑91 ggTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACACGGAAAAAAAACATTTTAAGCCGATGGGCAGG < 2:1882448/89‑1 GTTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAACAAACATTTTAAGCCGATGGGCAGG > 2:3692605/1‑91 TTATCCCCCTTTCATAAAAGTTTATCCGCGTTTCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGG < 2:2825934/91‑1 TATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGG > 1:973549/1‑91 ATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGG < 1:2988507/91‑1 TCCCCCTTTCATAAAAGTTTATGTGCGTTGCAAGCGAAGGGCCCCCGCCTGTACCCGGCTAAAAAACATTTTAAGCCGATGGGCAGGGGGC < 2:3008675/91‑1 TCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCCGGGGGC > 2:1069946/1‑91 TCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGC > 2:1598085/1‑91 TCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGC > 1:227728/1‑91 TCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGC > 1:1855093/1‑91 TCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGC > 1:3836398/1‑91 AGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGG > 1:401693/1‑91 CCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGAT > 1:2808931/1‑91 CCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAATGCGGATAAACTTTTATGAAAGGGGGATAA > 2:2878887/1‑91 CCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAATGCGGATAAACTTTTATGAAAGGGGGATAA > 2:2879105/1‑91 GCCGGTACCCGGCGAAAAACCATTTAAAGCCGCTGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAACCTTTTATGAAAGGGGGATAACTc > 2:2447551/1‑90 GCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCTCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTT > 1:2645382/1‑91 GCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTT > 1:1242516/1‑91 GCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAA‑GGGGATAACTTG > 1:3584875/1‑91 CGGTACCCGGCGAAAAAACATGTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACGTGA > 1:1451/1‑91 GGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGAT > 1:3903340/1‑91 GGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGAT > 1:3903373/1‑91 GTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATg > 2:3938229/1‑90 GTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATT > 1:2766865/1‑91 GTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATT > 2:773205/1‑91 GTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATT > 1:466175/1‑91 GTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATT > 1:2302853/1‑91 GTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATT > 1:215664/1‑91 GGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTC > 1:3015296/1‑91 GGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTC < 1:153609/91‑1 GGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTC < 1:1734287/91‑1 GGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCG > 1:3081183/1‑91 GGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCG < 2:3940835/91‑1 GGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGA < 1:1929104/91‑1 GGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGA < 1:591633/91‑1 GGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGA < 2:738172/91‑1 GCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATA < 1:706112/91‑1 CCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT > 1:2002703/1‑91 CCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT > 1:188432/1‑91 CCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT > 1:2002704/1‑91 CCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT > 1:2002873/1‑91 CCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT > 1:1233360/1‑91 CCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT < 1:2430004/91‑1 CCCTTCGCTTGCAACGCGGATAAACTATTATGAAAGGGTGATAACTTGATTTATCCCTTTTTCAGATACTTACAAATATTAAATTGGTTAT > 2:1294254/1‑91 CCCTGCGCTCGCAACGCGGATAATCTTTTACGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT < 2:3614378/91‑1 AGTTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCGATGGGCAGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/906338‑906243‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggcCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATAT > USA300TCH1516_ALE/906294‑906383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |