| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 920377 = | 124 (0.610) | 12 (0.070) | 7/132 | NT | 9.7% | intergenic (+6/‑207) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | 920443 = | 121 (0.720) | intergenic (+72/‑141) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein | |||||
CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/920480‑920377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtggattgcgTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCG > USA300TCH1516_ALE/920443‑920532 CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCT < 2:1442135/91‑1 TTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTT < 2:2441554/91‑1 TTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTT < 1:3013239/91‑1 TGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTT < 1:104523/91‑1 TGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTT < 2:2011116/91‑1 TGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTT > 2:1164275/1‑91 GATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTT > 1:503472/1‑91 ATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTG > 2:1860330/1‑91 ATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTG < 1:2014070/91‑1 TGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGT < 2:1146153/91‑1 GTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTG < 1:3424493/91‑1 TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGG > 2:1287760/1‑91 TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGG > 2:192458/1‑91 TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGG > 1:2367722/1‑91 TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGG < 1:14635/91‑1 TTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGA > 1:3042870/1‑91 TTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGAT < 1:1306408/91‑1 TTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGAT < 1:922597/91‑1 TCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATT > 2:679646/1‑91 CGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTG < 2:786594/91‑1 TTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCG < 1:2027336/91‑1 ATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAA > 2:646346/1‑91 ACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACA > 1:3561727/1‑91 AAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATC > 1:367851/1‑91 AAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATC > 2:3156670/1‑91 AAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATC > 2:1205858/1‑91 AAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATC > 2:879040/1‑91 AAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAA > 2:582562/1‑91 AAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAA > 2:506025/1‑91 AAATGGCAAGCACTAAAATAATGTTTGGGGGAGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAACCAAACGAAAACATCAA > 2:3027181/1‑91 AATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAG > 2:3787847/1‑91 ATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC > 1:1526320/1‑91 GGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTG > 1:1911836/1‑91 TTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATC > 1:555661/1‑91 TTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATC > 1:1997280/1‑91 TTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATC > 1:3921329/1‑91 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA > 2:2863157/1‑91 TTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAA < 2:1660389/91‑1 TGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAA > 1:3697279/1‑91 TGTGGATTGCGATTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAA > 2:1362008/1‑91 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGTTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC < 1:3432648/91‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC > 2:451930/1‑91 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT > 1:1672424/1‑91 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA > 2:2113336/1‑91 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA < 2:994061/91‑1 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA > 1:1042184/1‑91 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA > 1:1870442/1‑91 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGAAAAAACATCAAACTA > 2:2113228/1‑91 GGATTGCGTTTCTATTTTACCAATTTAATCAAACAAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA < 2:268586/91‑1 GATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAA < 2:2029024/91‑1 GATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAA < 1:39024/91‑1 GATTGCGTTTCTAGTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAA < 2:2373604/91‑1 ATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAA > 2:1073546/1‑91 ATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAA > 1:2450036/1‑91 TTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAG > 1:1904745/1‑91 TGCGTTTCTATTTTATCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGT < 2:1462910/91‑1 TGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGT < 2:84364/91‑1 TGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGT < 1:3901151/91‑1 TGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGT < 2:2390125/91‑1 GCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTT < 2:991428/91‑1 CGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTC > 2:3380411/1‑91 GTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCG < 2:1548575/91‑1 GTTTCAATTTTACCAATTTCATCAAACGAAAACATCAAGCTGAAGATCGACGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCG > 2:1574245/1‑91 CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/920480‑920377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtggattgcgTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCG > USA300TCH1516_ALE/920443‑920532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |