| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 920377 = | 124 (0.610) | 12 (0.070) | 7/132 | NT | 9.7% | intergenic (+6/‑207) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | 920443 = | 121 (0.720) | intergenic (+72/‑141) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein | |||||
Only 100 of 193 total aligned reads displayed.
CCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAA > USA300TCH1516_ALE/920287‑920467 | cgaactttagtttgatgtttttgcttgattaaaatctttcgtcgatcttcagcttgatgttttcgtttgatgaaattggtaaaattgaaac > 2:1574245‑M1/91‑91 (MQ=255)cgaactttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaac < 2:1548575‑M1/1‑1 (MQ=255)cccGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGAcc > 1:1067453/1‑91 (MQ=255)cccGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGAcc < 1:1617315/91‑1 (MQ=255)cccGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGAcc > 1:3842547/1‑91 (MQ=255) gaactttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCg > 2:3380411‑M1/90‑91 (MQ=255) ccGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCg < 2:3037927/91‑1 (MQ=255) cgcgACTAGCAAGAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGc > 1:3052925/1‑91 (MQ=255) cgcgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGc > 1:129209/1‑91 (MQ=255) aactttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGc < 2:991428‑M1/3‑1 (MQ=255) actttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCa < 2:84364‑M1/4‑1 (MQ=255) actttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattgataaaatagaaaCGCa < 2:1462910‑M1/4‑1 (MQ=255) cgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCaa > 1:1375990/1‑91 (MQ=255) tttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAAt > 2:1073546‑M1/86‑91 (MQ=255) tttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAAt > 1:2450036‑M1/86‑91 (MQ=255) gACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAAt < 2:721928/91‑1 (MQ=255) ttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaactagaaaCGCAATc < 2:2373604‑M1/7‑1 (MQ=255) ttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATc < 2:2029024‑M1/7‑1 (MQ=255) ttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATc < 1:39024‑M1/7‑1 (MQ=255) tagtttgatgttttttcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATcc > 2:2113228‑M1/84‑91 (MQ=255) tagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgtttttgtttgattaaattggtaaaatagaaaCGCAATcc < 2:268586‑M1/8‑1 (MQ=255) tagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATcc > 1:1042184‑M1/84‑91 (MQ=255) cTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATcc < 1:1842123/91‑1 (MQ=255) tAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAACAATCGACCGCAATCca > 2:1259544/1‑91 (MQ=255) gtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCcac > 2:451930‑M1/82‑91 (MQ=255) gtttgatgtttttgcttgattaaaatctttcggcgatcttcaacttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCcac < 1:3432648‑M1/10‑1 (MQ=255) aGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCGATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCcac > 2:3050182/1‑91 (MQ=255) tttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaatCGCAATCcaca > 2:1362008‑M1/81‑91 (MQ=255) gCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAACTTAATCAAATCATGCAATATAAATAATCGACCGCAATCcaca > 2:1701256/1‑91 (MQ=255) caacaaCGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACaa > 2:649850/1‑91 (MQ=255) caacaaCGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACaa > 1:3348754/1‑91 (MQ=255) tgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACaaa > 2:2863157‑M1/79‑91 (MQ=255) aacaacGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACaaa > 1:1580305/1‑91 (MQ=255) gatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACaaaa > 1:1997280‑M1/78‑91 (MQ=255) acGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagca < 2:2270794/91‑1 (MQ=255) acGCATCACGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagca < 1:1976788/91‑1 (MQ=255) cGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAACCCACAAaagcac > 2:658539/1‑91 (MQ=255) cATCCCGCCAACACCATCATGTCCAATATAATCGACCCAATTAATCCAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaa > 1:3149839/1‑91 (MQ=255) cATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaa > 1:3799103/1‑91 (MQ=255) cATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaa > 1:524382/1‑91 (MQ=255) aTCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTCATCAAATCATGCAATATAAATAATCGCCCGCAATCCACAAaagcacaag > 2:3001022/1‑91 (MQ=255) aTCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaag > 1:1660389/1‑91 (MQ=255) aTCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaag < 1:1995205/91‑1 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc > 1:3593242/1‑91 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc < 1:534914/91‑1 (MQ=255) ccGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACGAaagcacaagcac > 1:378073/1‑91 (MQ=255) ccGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagcac > 1:763634/1‑91 (MQ=255) cGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCAcc > 1:2029024/1‑91 (MQ=255) acCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAAc < 1:2329970/91‑1 (MQ=255) acCATCATGTCCAATATAATCAATCAAATTAAGCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAAc < 2:2471941/91‑1 (MQ=255) ccATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCACTCCACAAAAGCACACGCACCCCCAAAcc > 2:1248583/1‑90 (MQ=255) ccATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACa > 1:2080494/1‑91 (MQ=255) catcatGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACat < 2:3495880/91‑1 (MQ=255) atcatGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACatt > 2:2523509/1‑91 (MQ=255) catGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACattat > 1:2078169/1‑91 (MQ=255) gTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTAtttt > 2:2823880/1‑91 (MQ=255) tCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTa > 2:868112/1‑91 (MQ=255) ccAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAg > 1:1816370/1‑91 (MQ=255) cAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGt > 2:1707146/1‑91 (MQ=255) aatcaatcAAATTAAACAAATCATGCAATATAAATAATCGAACGAAAACAACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGc < 2:1728817/91‑1 (MQ=255) cagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGcc > 1:1911836‑M1/42‑91 (MQ=255) atcaatcaAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGcc < 1:520114/91‑1 (MQ=255) gcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAt > 1:1526320‑M1/40‑91 (MQ=255) caatcaaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAt > 1:122357/1‑91 (MQ=255) aatcaaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAtt < 1:2467945/91‑1 (MQ=255) aatcaaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAtt < 2:2446229/91‑1 (MQ=255) ttgatgttttcgtttggttaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCTCCCCCAAACATTATTTTAGTGCTTGCCAttt > 2:3027181‑M1/38‑91 (MQ=255) ttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAttt > 2:582562‑M1/38‑91 (MQ=255) gatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAttttt > 2:1205858‑M1/36‑91 (MQ=255) gatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAttttt > 2:3156670‑M1/36‑91 (MQ=255) gatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAttttt > 1:367851‑M1/36‑91 (MQ=255) tAATCAAATCATGCAATATAAATAATCGTCCGCAATCCACAAGAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGa < 1:1700624/91‑1 (MQ=255) atcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGAtt > 2:2901164/1‑91 (MQ=255) caaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGc > 1:3374310/1‑91 (MQ=255) aaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCg > 2:3451418/1‑91 (MQ=255) aaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCg > 2:3717948/1‑91 (MQ=255) aaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCg < 2:3081941/91‑1 (MQ=255) aaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCg < 2:1938285/91‑1 (MQ=255) aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGt > 1:2408183/1‑91 (MQ=255) atcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGtt > 1:3315942/1‑91 (MQ=255) atcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGtt < 1:2827044/91‑1 (MQ=255) tcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGttt < 2:1771193/91‑1 (MQ=255) caTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTc > 2:2375348/1‑91 (MQ=255) aTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCt > 2:1880508/1‑91 (MQ=255) gCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAt > 2:2238421/1‑91 (MQ=255) cAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAtt < 1:1873453/91‑1 (MQ=255) aaTATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAGCATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAttt < 1:2621165/91‑1 (MQ=255) atatAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAtttt > 2:2274890/1‑91 (MQ=255) taaataaTCGACCGCAATCCACAAAAGCACAATCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTAcc > 2:3876758/1‑91 (MQ=255) taaataaTCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTAcc < 2:1972815/91‑1 (MQ=255) ataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt > 2:3217952/1‑91 (MQ=255) ataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt < 1:2180714/91‑1 (MQ=255) ataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt < 1:2057779/91‑1 (MQ=255) ataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt < 2:2401876/91‑1 (MQ=255) aatCGACCGCAATCCACAAAAGCACAAGCACCCCCACACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAttt < 2:3910158/91‑1 (MQ=255) aatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTATGTCGATTGCGTTTCTGTTTTACCCAttt > 2:35855/1‑91 (MQ=255) tCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTaa > 1:58230/1‑91 (MQ=255) gcGACCGCAATCCACAAAAGCACAAGCACCCCCAACCATTATTTTAGTGCGTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTaa < 1:303988/90‑1 (MQ=255) ccGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCaa > 2:777481/1‑91 (MQ=255) ccGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCaa > 2:1008259/1‑91 (MQ=255) | CCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAA > USA300TCH1516_ALE/920287‑920467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |