| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 940823 = | 193 (0.950) | 11 (0.060) | 8/140 | NT | 6.4% | intergenic (+4/+52) | USA300HOU_RS04680/ptlE | Putative esterase/Neopentalenolactone D synthase |
| ? | USA300TCH1516_ALE | 940872 = | 153 (0.860) | intergenic (+53/+3) | USA300HOU_RS04680/ptlE | Putative esterase/Neopentalenolactone D synthase | |||||
GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/940922‑940823‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctagcagttTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > USA300TCH1516_ALE/940872‑940961 GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAG < 2:594250/91‑1GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAG > 1:3252887/1‑91GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAG > 2:3857302/1‑91GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAG > 1:446077/1‑91GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAG < 1:669690/91‑1 AACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGC < 2:604058/91‑1 AACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGC < 2:366978/91‑1 AACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGC < 1:676107/91‑1 ACGCATTGAACATGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCT > 1:3051583/1‑91 ACGCATTGAACATGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCT > 1:3051547/1‑91 ACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCT < 2:2275910/91‑1 CGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTA > 2:29252/1‑91 GCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAG < 1:3425324/91‑1 GCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAG < 1:3493972/91‑1 GCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAG < 1:3494209/91‑1 GCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAG > 2:2520323/1‑91 GCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAG < 1:1708995/91‑1 CATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGC < 1:1744823/91‑1 CATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGC > 1:1567821/1‑91 TTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAG > 2:2570876/1‑91 TTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAG < 2:3279812/91‑1 TTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAG < 1:2042398/91‑1 TTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAG > 1:3866291/1‑91 TTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAG < 2:52744/91‑1 TGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGT < 2:2758779/91‑1 TGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGT < 2:3162508/91‑1 TGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGT > 1:446347/1‑91 TGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGT < 1:2627695/91‑1 TGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGT > 1:3087094/1‑91 GAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT > 2:2396769/1‑91 GAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT > 1:3756013/1‑91 GAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT < 1:1159323/91‑1 TAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTCTTATGCGCTATATTGTTGTAGTTTTAGAAATGC > 1:3506853/1‑91 AAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGTAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGT > 1:3139248/1‑91 AAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTT > 1:3263553/1‑91 ACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCCGCTAGCAGTCCTTTTATGCGCACTATCGTTGTCGATTTAGAACTGCTTGTTCA > 2:3621220/1‑91 ACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTCTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCA > 2:1698340/1‑91 GCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATG > 2:2549676/1‑91 CTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGC > 1:2271818/1‑91 CTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGC > 1:3527246/1‑91 CCGTAGTTATGAGTATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTC > 1:3029084/1‑91 GTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGG > 1:740032/1‑91 GTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGG > 2:2841966/1‑91 GCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCT > 1:1287814/1‑91 GCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCT > 1:2113299/1‑91 GCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCT > 1:2952412/1‑91 CTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTTAATGCGTTCGGCAGCTTTACGGCGAACCATAACATTTCTg > 2:3782967/1‑90 CTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTA > 2:2683024/1‑91 CTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTA < 1:15073/91‑1 CTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTA > 1:1548996/1‑91 CTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTA > 2:3135752/1‑91 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC < 2:2098477/91‑1 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC < 1:3456328/91‑1 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC < 2:1399818/91‑1 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC < 2:1400047/91‑1 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC > 1:2236195/1‑91 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC < 2:1400065/91‑1 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTCTACGGCCACCCATAACATTTCTAC > 2:3681103/1‑91 AGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACC > 1:1675479/1‑91 AGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACC < 1:2341852/91‑1 GCAGTTTCTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCA > 2:3577151/1‑91 CAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTGTACCAA < 1:3072934/91‑1 CAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAA < 2:3425324/91‑1 CAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTATACCAA < 1:3072870/91‑1 CAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTATACCAA < 1:3073003/91‑1 CAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTATACCAA < 1:3072872/91‑1 TTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATG < 2:2069095/91‑1 TTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATG < 2:2069383/91‑1 TTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATG < 2:2069403/91‑1 TTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > 2:1170747/1‑91 TTTTTTATGCGCTACATTGCTGTAGTTTTCGCAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCCACCCACTGG > 2:3852967/1‑91 GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/940922‑940823‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctagcagttTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > USA300TCH1516_ALE/940872‑940961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |