| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 954365 = | 155 (0.760) | 9 (0.050) | 6/138 | NT | 5.8% | intergenic (+19/+484) | gluD/glpQ_1 | NAD‑specific glutamate dehydrogenase/Glycerophosphodiester phosphodiesterase |
| ? | USA300TCH1516_ALE | 954407 = | 159 (0.910) | intergenic (+61/+442) | gluD/glpQ_1 | NAD‑specific glutamate dehydrogenase/Glycerophosphodiester phosphodiesterase | |||||
TTTTGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/954465‑954365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagctcgttaaTTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG > USA300TCH1516_ALE/954407‑954496 TTTTGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCA < 1:2252974/91‑1 TGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGC < 1:1472884/91‑1 TGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGC < 1:764551/91‑1 TGAAAAGAGCGTGCTACACGGGCATTGTTTTACAGTCAACTACGGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGC < 1:3962390/91‑1 GAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCT < 2:94663/91‑1 GAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCT < 2:144379/91‑1 AAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAATGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTC < 2:3892338/91‑1 AAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTC < 2:2539192/91‑1 AAAAGAGCGTGGTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTC < 1:3580965/91‑1 AAAGAGCGTGTTACACGGACATTGTTTTACAGTCAACTACTGCTAAAATAAAAATAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCG < 2:2402992/91‑1 AAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGT < 1:350410/91‑1 atAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTT < 2:1414474/89‑1 AGAGCGTGTTACGCGGGCATTGTGTTACAGGCAACTACGGCTAAAATAAAATTAACGAGCTTAGGGCGTTGTTTTCTGTCCCAAGCTCGTT < 2:1414439/91‑1 AGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTT > 2:1264758/1‑91 AGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTT > 1:2853274/1‑91 AGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTT < 1:2142587/91‑1 AAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACAC > 1:3642579/1‑91 ATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGC > 1:3459628/1‑91 ATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGC > 1:3459713/1‑91 ATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGC > 1:3459714/1‑91 GCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCA > 2:334020/1‑91 GCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCA > 1:1873865/1‑91 GGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAAT > 1:416945/1‑91 GGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATA > 1:2372981/1‑91 GCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAG > 2:1321507/1‑91 AAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAG < 2:1609682/91‑1 AAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAG < 2:1881054/91‑1 AAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAG < 2:1881219/91‑1 AAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTACAAAAATAGTCGGGGCCCCAACACAG < 2:1394006/91‑1 cGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGGAGAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGA < 2:1905916/90‑1 AGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGA > 2:1345551/1‑91 AGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGA > 2:1345565/1‑91 CTCGTTACTTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGG < 1:1960964/91‑1 TCGTTAATTTTATTTTAGCAGTTGTTGACTGTAAAACAATGCCCGTGTAACATGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGC > 2:1495009/1‑91 TCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGC < 1:2501714/91‑1 CGTTAATGTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCT < 1:1956189/91‑1 GTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTG < 2:2142587/91‑1 GTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTCTCAAAAATAGTCGGGGCCCCAACACAGAGGCTG > 1:3246107/1‑91 TTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGG < 1:267317/91‑1 TTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGG > 2:2678251/1‑91 TTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGG < 1:2339741/91‑1 TAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGg > 2:3933243/1‑90 TAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGT > 1:918449/1‑91 TAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGT > 1:1151906/1‑91 TAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGT > 1:1549234/1‑91 ATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGactt < 2:292827/91‑5 ATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG > 2:2231995/1‑91 ATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG < 1:3727617/91‑1 ATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG < 1:1362979/91‑1 ATTTTATTTTAGCAGTAGTTGACTGCGAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG < 2:3431225/91‑1 TTTTGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/954465‑954365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagctcgttaaTTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG > USA300TCH1516_ALE/954407‑954496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |