| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 971887 = | 174 (0.850) | 8 (0.040) | 5/140 | NT | 5.0% | coding (973/1317 nt) | cdr | Coenzyme A disulfide reductase |
| ? | USA300TCH1516_ALE | 971952 = | 149 (0.840) | coding (908/1317 nt) | cdr | Coenzyme A disulfide reductase | |||||
GTTCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/971986‑971887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaacaataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCA > USA300TCH1516_ALE/971952‑972041 GTTCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAG > 1:1452446/1‑91GTTCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAG > 2:1316423/1‑91GTTCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAG > 2:2032066/1‑91GTTCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAG < 1:2246274/91‑1GTTCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAG > 2:3569125/1‑91 TTCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGG > 1:643649/1‑91 TCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGC < 2:393255/91‑1 TCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGC < 2:1732646/91‑1 TCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGC < 2:1732500/91‑1 TCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGC < 1:2155699/91‑1 CCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCA < 2:1786161/91‑1 CCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCA < 2:1786028/91‑1 CCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCA < 2:1785983/91‑1 TTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACA > 1:2375681/1‑91 TTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACA > 1:2376057/1‑91 AGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAAT < 2:2569011/91‑1 AGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAAT < 1:337057/91‑1 AGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAAT < 2:3706847/91‑1 GCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATA > 1:1819260/1‑91 GCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATA > 1:1817381/1‑91 GTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAA > 2:531280/1‑91 TTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAG > 1:56309/1‑91 TGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGG > 1:1611819/1‑91 TGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGG > 1:1611848/1‑91 GCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGA > 1:1513493/1‑91 CCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAA > 1:3736924/1‑91 CCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAA > 1:827765/1‑91 CCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAA > 1:829023/1‑91 CAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCC > 1:3869228/1‑91 CAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCC < 1:3929540/91‑1 CAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCC > 1:3869210/1‑91 CAACAATACTTACTGCACGGTGAGCGCACCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCC < 1:782945/91‑1 ACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTA > 2:12394/1‑91 ACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTA > 1:1405912/1‑91 CAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTAT > 1:3661048/1‑91 CAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTAT > 1:3384378/1‑91 CAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTAT > 1:1528562/1‑91 AATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATT > 2:1476094/1‑91 ATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTG > 2:3076928/1‑91 TACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGC < 2:785774/91‑1 TACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGC > 1:417640/1‑91 ACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCA < 1:3255273/91‑1 ACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCA < 1:3157041/91‑1 ACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCA < 1:2862432/91‑1 ACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGACCGACATGTCGACAATGTGATGTTGCAATATCGCCTATTGCA > 2:2928406/1‑91 GTTCCTTTAGCTTGGGGCGCTCACCGTGCAGCAAGTATTGTTGCCGAACAAATTGCTGGAAATGACACTATTGAATTCAAAGGCTTCTTAGGCAACAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/971986‑971887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaacaataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCA > USA300TCH1516_ALE/971952‑972041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |