BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	971887 =	174 (0.850)	8 (0.040)	5/140	NT	5.0%	coding (973/1317 nt)	cdr	Coenzyme A disulfide reductase
*	?	USA300TCH1516_ALE	971952 =	149 (0.840)	8 (0.040)	5/140	NT	5.0%	coding (908/1317 nt)	cdr	Coenzyme A disulfide reductase

Only 100 of 232 total aligned reads displayed.

AATGTATAATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCAT  >  USA300TCH1516_ALE/971862‑972042

 aTGTATAATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACt                                                                                           <  2:1918555/91‑1 (MQ=255)

  tGTATAATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACtt                                                                                          <  2:1442053/91‑1 (MQ=255)

  tGTATAATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACtt                                                                                          <  2:3022290/91‑1 (MQ=255)

   gTATAATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTtg                                                                                         <  1:2297060/91‑1 (MQ=255)

    tataATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTtgc                                                                                        >  1:1192346/1‑91 (MQ=255)

     ataATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTtgct                                                                                       <  1:853912/91‑1 (MQ=255)

     ataATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTtgct                                                                                       >  2:1032167/1‑91 (MQ=255)

        aTCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCa                                                                                    >  2:3303243/1‑91 (MQ=255)

          cAAAGAACTTCACAATATTGTTGCCTAAGAATCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACg                                                                                  <  2:1730908/91‑1 (MQ=255)

           aaaGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACgg                                                                                 <  2:1953299/91‑1 (MQ=255)

            aaGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGt                                                                                <  1:1837897/91‑1 (MQ=255)

             aGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAACAATTTGTTCGGCAACAATACTTGCTGCACGGTg                                                                               >  1:1574186/1‑91 (MQ=255)

                aCTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAgc                                                                            >  1:1126570/1‑91 (MQ=255)

                aCTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAgc                                                                            >  1:1155310/1‑91 (MQ=255)

                aCTTCACAATATTGTTGCCGAAGAAGCCGTTGAATTCAATAGTGTCATTTCCAGCAAGTTGTTCGGCAACAATACTTGCTGCACGGTGAgc                                                                            <  2:880368/91‑1 (MQ=255)

                 cTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAgcg                                                                           >  2:2690826/1‑91 (MQ=255)

                  ttCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAgcgc                                                                          <  1:3498170/91‑1 (MQ=255)

                   tCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGcc                                                                         <  1:2472802/91‑1 (MQ=255)

                    cacaATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGccc                                                                        <  2:3551896/91‑1 (MQ=255)

                    cacaATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGccc                                                                        <  1:2103081/91‑1 (MQ=255)

                    cacaATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGccc                                                                        <  2:2438955/91‑1 (MQ=255)

                     acaATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGcccc                                                                       <  1:735330/91‑1 (MQ=255)

                      caATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCa                                                                      <  1:1089726/91‑1 (MQ=255)

                      caATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCa                                                                      <  2:3127282/91‑1 (MQ=255)

                      caATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCa                                                                      <  2:2285666/91‑1 (MQ=255)

                      caATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCa                                                                      >  2:2390484/1‑91 (MQ=255)

                       aaTATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCaa                                                                     >  1:2655222/1‑91 (MQ=255)

                         TATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGc                                                                   >  1:1817381‑M1/1‑91 (MQ=255)

                             gttgccgaacaaattgctggaaatgacactattgaattcaaaggcttcttaggcaacaataCTTGCTGCACGGTGAGCGCCCCAAGCTaaa                                                               >  2:531280‑M2/62‑91 (MQ=255)

                               tgccgaacaaattgctggaaatgacactattgaattcaaaggcttcttaggcaacaataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAgg                                                             >  1:1611819‑M2/60‑91 (MQ=255)

                               tgCCGAAGAAGCGTTTGAATTCAATAGTGTCGGTGCCAGGAATGTGTTCGGGAACAATACTTGCGGCAGGGGGAGCGCGCCAAGCTAAAgg                                                             <  2:62437/91‑1 (MQ=255)

                               TGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAgg                                                             <  2:1786028‑M1/91‑1 (MQ=255)

                                gccgaacaaattgctggaaatgacactattgaattcaaaggcttcttaggcaacaataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGa                                                            >  1:1513493‑M2/59‑91 (MQ=255)

                                GCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGa                                                            <  2:393255‑M1/91‑1 (MQ=255)

                                GCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGa                                                            <  1:2155699‑M1/91‑1 (MQ=255)

                                 ccgaacaaattgctggaaatgacactattgaattcaaaggcttcttaggcaacaataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGaa                                                           >  1:827765‑M2/58‑91 (MQ=255)

                                  CTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAAc                                                          >  1:1452446‑M1/1‑91 (MQ=255)

                                  CTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAAc                                                          <  1:2246274‑M1/91‑1 (MQ=255)

                                  CTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAAc                                                          >  2:2032066‑M1/1‑91 (MQ=255)

                                  CTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAAc                                                          >  2:1316423‑M1/1‑91 (MQ=255)

                                  CTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAAc                                                          >  2:3569125‑M1/1‑91 (MQ=255)

                                   tAAGAAGCCTTTGAATTCAATAGTTTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAaca                                                         <  1:1253135/91‑1 (MQ=255)

                                   tAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAaca                                                         <  2:1736026/91‑1 (MQ=255)

                                   tAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAaca                                                         >  1:1074121/1‑91 (MQ=255)

                                       aagCCTTTGAATTCAATTGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAg                                                     >  2:1511749/1‑91 (MQ=255)

                                        agCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGc                                                    <  2:916836/91‑1 (MQ=255)

                                        agCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGc                                                    <  2:2955566/91‑1 (MQ=255)

                                          ccTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCg                                                  >  2:3146916/1‑91 (MQ=255)

                                           cTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGTCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCgg                                                 <  2:2336477/91‑1 (MQ=255)

                                           cTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCgg                                                 <  1:3332987/91‑1 (MQ=255)

                                           cTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCgg                                                 <  2:1553490/91‑1 (MQ=255)

                                           cTTTGAATTCAATAGTGTCATTGCCAGCAATTTGGTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCgg                                                 <  2:1161012/91‑1 (MQ=255)

                                             ttGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTa                                               >  2:468050/1‑91 (MQ=255)

                                               gAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGa                                             <  1:602414/91‑1 (MQ=255)

                                               gAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGa                                             <  1:3756044/91‑1 (MQ=255)

                                               gAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACGTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGa                                             <  2:3595984/91‑1 (MQ=255)

                                                aaTTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGAt                                            >  2:1395965/1‑91 (MQ=255)

                                                   tCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGa                                         >  2:390450/1‑91 (MQ=255)

                                                     aaTAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAATGGAACACTAGCCGGTAGATCGAcc                                       >  2:3686634/1‑90 (MQ=255)

                                                      ctAGTGTCATTTCCAGCAATTTGTTCGACAAAAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACAt                                      <  2:2131628/90‑1 (MQ=255)

                                                      aTAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACAt                                      <  2:1158369/91‑1 (MQ=255)

                                                       tAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATg                                     <  1:1927266/91‑1 (MQ=255)

                                                       tAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATg                                     <  1:2032002/91‑1 (MQ=255)

                                                       tAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATg                                     <  1:130395/91‑1 (MQ=255)

                                                         gtgtCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTc                                   >  2:1432255/1‑91 (MQ=255)

                                                         gtgtCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTc                                   >  1:471275/1‑91 (MQ=255)

                                                         gtgtCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTc                                   <  2:1843598/91‑1 (MQ=255)

                                                           gtCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGa                                 >  2:2530175/1‑91 (MQ=255)

                                                           gtCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGa                                 >  2:839005/1‑91 (MQ=255)

                                                            tCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGAt                                >  1:384041/1‑91 (MQ=255)

                                                              aTTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGAACCACTAGCCGGTAGATCGACATGTCGATaa                              >  1:3165481/1‑91 (MQ=255)

                                                               tttCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAAt                             <  2:697201/91‑1 (MQ=255)

                                                                ttCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAAtg                            <  1:3487328/91‑1 (MQ=255)

                                                                   cAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGa                         >  1:1628111/1‑91 (MQ=255)

                                                                   cAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGa                         >  2:337139/1‑91 (MQ=255)

                                                                     gCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATg                       >  1:3005579/1‑91 (MQ=255)

                                                                     gCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATg                       >  2:2884306/1‑91 (MQ=255)

                                                                      cAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGt                      >  2:3645892/1‑91 (MQ=255)

                                                                        aTTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTATCCGGTAGATCGACATGTCGATAATGTGATGTTg                    <  1:1196766/91‑1 (MQ=255)

                                                                        aTTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTg                    >  1:693695/1‑91 (MQ=255)

                                                                          ttGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCa                  >  2:497314/1‑91 (MQ=255)

                                                                           tGTTCGGCAACAATACTTGCTGCACGGTGGGCGCCCCAAGCTAAAGGGACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCaa                 <  2:3775444/91‑1 (MQ=255)

                                                                            gTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGTCATGTCGATAATGTGATGTTGCTat                >  2:3343219/1‑91 (MQ=255)

                                                                            gTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAat                >  2:953695/1‑91 (MQ=255)

                                                                            gTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAat                >  1:2174107/1‑91 (MQ=255)

                                                                            gTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAat                >  1:894863/1‑91 (MQ=255)

                                                                            gTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGAAAATGTGATGTTGCAat                >  2:3783348/1‑91 (MQ=255)

                                                                             ttCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGCCATGTCGATAATGTGATGTTGCAata               >  2:2120880/1‑91 (MQ=255)

                                                                             ttCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAata               <  1:765670/91‑1 (MQ=255)

                                                                               cGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATc             >  1:1016546/1‑91 (MQ=255)

                                                                                  caacaataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGcc          <  1:3929540‑M2/83‑1 (MQ=255)

                                                                                  caacaataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGcc          >  1:3869228‑M2/9‑91 (MQ=255)

                                                                                    acaataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTa        >  1:1405912‑M2/7‑91 (MQ=255)

                                                                                     caataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTAt       >  1:3384378‑M2/6‑91 (MQ=255)

                                                                                     caataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTAt       >  1:1528562‑M2/6‑91 (MQ=255)

                                                                                       ataCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTg     >  2:3076928‑M2/4‑91 (MQ=255)

                                                                                         aCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCa   <  1:3157041‑M2/90‑1 (MQ=255)

                                                                                         aCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCa   <  1:2862432‑M2/90‑1 (MQ=255)

                                                                                         aCTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGACCGACATGTCGACAATGTGATGTTGCAATATCGCCTATTGCa   >  2:2928406‑M2/2‑91 (MQ=255)

                                                                                          cTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCAt  >  2:2157530/1‑91 (MQ=255)

AATGTATAATCAAAGAACTTCACAATATTGTTGCCTAAGAAGCCTTTGAATTCAATAGTGTCATTTCCAGCAATTTGTTCGGCAACAATACTTGCTGCACGGTGAGCGCCCCAAGCTAAAGGAACACTAGCCGGTAGATCGACATGTCGATAATGTGATGTTGCAATATCGCCTATTGCAT  >  USA300TCH1516_ALE/971862‑972042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.