| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 987447 | 185 (0.910) | 25 (0.150) | 12/128 | NT | 13.9% | intergenic (+20/+35) | fabF/USA300HOU_RS04885 | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2/hypothetical protein |
| ? | USA300TCH1516_ALE | = 987456 | 162 (1.000) | intergenic (+29/+26) | fabF/USA300HOU_RS04885 | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2/hypothetical protein | |||||
CCTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/987343‑987447‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatcttcagtaacTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCTATTA < USA300TCH1516_ALE/987456‑987367 CCTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAA < 2:492788/91‑1CCTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAA > 2:3418290/1‑91CCTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAA < 1:440163/91‑1 CTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAA < 2:3808405/91‑1 CTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAA < 1:2223788/91‑1 CTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAA < 1:3824471/91‑1 CTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAA > 1:1586773/1‑91 TTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAA > 1:2897310/1‑91 TGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAA < 2:1197284/91‑1 TGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAA < 2:1197405/91‑1 TGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAA < 1:2597351/91‑1 TGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAA > 2:2112640/1‑91 TGATATTACGTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAA < 2:1197492/91‑1 GATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAAT > 2:674980/1‑91 GATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAAT < 1:1752287/91‑1 ATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATC < 2:2504361/91‑1 TATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCT > 1:3796656/1‑91 TTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTC > 1:384088/1‑91 TTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTC < 2:1351373/91‑1 TTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTC < 2:275275/91‑1 ACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAG > 1:794081/1‑91 CTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGT < 1:3861292/91‑1 CTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGT > 2:2616234/1‑91 CTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGT > 2:2618454/1‑91 CTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGT < 1:1435728/91‑1 CTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGT < 2:363907/91‑1 CTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGT > 1:3196070/1‑91 TATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAA < 2:986280/91‑1 ATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAAC < 1:2913486/91‑1 ATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAAC > 1:15714/1‑91 AGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAA < 2:1715569/91‑1 AGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAA < 1:1104330/91‑1 AGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAA < 1:2634211/91‑1 GTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAAC < 2:2537668/91‑1 GTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAAC < 2:1413632/91‑1 GTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAAC < 2:213193/91‑1 GTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAAC < 2:275312/91‑1 GTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAAC < 1:1010508/91‑1 GTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAAC < 2:879274/91‑1 GTAATAGCTTAGGATTCGGTGGACAGAACACAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAAC < 2:1385180/91‑1 TAATAGCTTAGGATTCGGTGTACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACG < 1:2299367/91‑1 TAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACG < 2:2758510/91‑1 TAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACG < 2:2444635/91‑1 GCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACT < 2:3590143/91‑1 GCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACT < 1:2092044/91‑1 GCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACT < 1:2091752/91‑1 TTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGA < 1:163259/91‑1 TAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAA < 1:1010475/91‑1 AGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAAG < 2:2585657/91‑1 GATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAAGAT < 2:3679371/91‑1 GGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTA < 1:3403986/91‑1 GTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTAT < 2:2971214/91‑1 CATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTA < 1:2417578/91‑1 CATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTA < 1:2417446/91‑1 GTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAA < 1:794208/91‑1 ACTATAAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTC < 2:607667/91‑1 AAAAATCTTCAGTAACTAAAACCACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCG < 2:3189886/91‑1 AAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCG < 2:2762399/91‑1 AAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCG < 1:1522172/91‑1 AAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCG > 1:1619051/1‑91 AAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCG < 1:1624526/91‑1 AAAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCG > 2:1985349/1‑91 AAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGA > 1:1024005/1‑91 AAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGA > 1:1295964/1‑91 AAAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGA > 2:2766115/1‑91 AAATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAA > 1:3550867/1‑91 AATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAAT > 1:3894819/1‑91 AATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAAT > 2:1472300/1‑91 AATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAAT > 2:3075124/1‑91 AATCTTCAGTAACTAAAACAACGTTACTGAAGATTTGTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAAT < 2:3908829/91‑1 ATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATC < 2:2415449/91‑1 ATCTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATC < 2:1302813/91‑1 CTTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCT < 2:2474957/91‑1 TTCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTA > 1:2158883/1‑91 TCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAA < 1:2456009/91‑1 TCAGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCATAA > 1:3183171/1‑91 AGTAACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGC < 1:3769690/91‑1 GTAACTAAAACAAAGTTACTGAAGATTTTTATAGTTATGCTTCGAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCT < 1:3952240/91‑1 ACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCTATT < 1:1940185/91‑1 ACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCTATT > 2:2047662/1‑91 ACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCTATT > 2:2047729/1‑91 ACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCTATT < 2:3136757/91‑1 ACTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCTATT < 1:856512/91‑1 CTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCTATTA < 2:2764117/91‑1 CCTTGATATTACTTATGCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/987343‑987447‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatcttcagtaacTAAAACAACGTTACTGAAGATTTTTATAGTTATGCTTCAAATTTCTTGAATACTAATACTGCGTTATGTCCACCGAATCCTAAGCTATTA < USA300TCH1516_ALE/987456‑987367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |