| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1015009 = | 207 (1.020) | 19 (0.100) | 11/150 | NT | 9.2% | intergenic (+124/+71) | fabI/USA300HOU_RS05015 | Enoyl‑[acyl‑carrier‑protein] reductase [NADPH] FabI/hypothetical protein |
| ? | USA300TCH1516_ALE | 1015047 = | 180 (0.940) | intergenic (+162/+33) | fabI/USA300HOU_RS05015 | Enoyl‑[acyl‑carrier‑protein] reductase [NADPH] FabI/hypothetical protein | |||||
GCAAACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1015103‑1015009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGAAA > USA300TCH1516_ALE/1015047‑1015134 GCAAACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGG < 2:3851103/91‑1GCAAACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGG > 1:274124/1‑91 CAAACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGC < 1:1658359/91‑1 CAAACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGC > 1:1800849/1‑91 AAACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCG > 2:369189/1‑91 AAACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCG < 1:2383789/91‑1 AACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGA < 1:1663902/91‑1 AACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGA > 2:633231/1‑91 AACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGA < 1:2891745/91‑1 AACAGTAATGTTAAGGACTAATTCTGTGCATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGA < 1:2121400/91‑1 AACAGTAATGTTAAGGACCAATTCTGGGGATGTCTGTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGA < 1:2891776/91‑1 AACAGTAAGGGTGAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGA < 2:1624559/91‑1 AACAGTAAGGGTAAGGACGAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGA < 2:1624493/91‑1 ACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGAT > 2:2998743/1‑91 ACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGAT < 1:3939717/91‑1 ACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTGAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGAT < 2:3118310/91‑1 ATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCT > 1:1040350/1‑91 AGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACA > 2:280488/1‑91 ATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGT > 1:13900/1‑91 GCATCAAAAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTCCTGTTTG > 1:1962848/1‑91 GCATCAAAAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTG > 1:362553/1‑91 GCATCAAAAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTATTTG > 2:546523/1‑91 AAAAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTA > 2:3793336/1‑91 AAAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTAT > 2:1801362/1‑91 AAGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATC > 2:536436/1‑91 AGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCA > 1:3769706/1‑91 AGTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCA > 1:3769692/1‑91 GTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAA > 2:73278/1‑91 GTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAA > 1:684186/1‑91 GTTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAA > 1:955398/1‑91 TTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAAT > 2:1067056/1‑91 TTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAAT > 2:1066784/1‑91 TTGAAACTACAGCTTTTGAGGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAAT > 1:1177477/1‑91 TTGAAACTACAGCTCTTGAGGCGATAGTACCTCATATCCTTAAAAGACATCCACAGAATTAGTCCTTAACATCACGGTTTGCCTTATCCAT > 2:3438526/1‑91 TGAAACTACAGCTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATA > 1:3736123/1‑91 GCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGA > 2:2513550/1‑91 GCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGA > 2:1254205/1‑91 GCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGA > 2:1254107/1‑91 GCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGA > 1:2915170/1‑91 CGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGAA < 1:464126/91‑1 GATCGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGAAA < 1:3182733/91‑1 GCAAACAGTAATGTTAAGGACTAATTCTGTGGATGTCTTTTAAGAATATAAGATACTATCGCATCAAAAGTTGAAACTACAGCTTTTGAGGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1015103‑1015009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGAAA > USA300TCH1516_ALE/1015047‑1015134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |