BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1015009 =	207 (1.020)	19 (0.100)	11/150	NT	9.2%	intergenic (+124/+71)	fabI/USA300HOU_RS05015	Enoyl‑[acyl‑carrier‑protein] reductase [NADPH] FabI/hypothetical protein
*	?	USA300TCH1516_ALE	1015047 =	180 (0.940)	19 (0.100)	11/150	NT	9.2%	intergenic (+162/+33)	fabI/USA300HOU_RS05015	Enoyl‑[acyl‑carrier‑protein] reductase [NADPH] FabI/hypothetical protein

Only 100 of 250 total aligned reads displayed.

GATGGAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGAAA  >  USA300TCH1516_ALE/1014958‑1015134

gATGGAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAg                                                                                        >  1:1225204/1‑91 (MQ=255)

gATGGAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAg                                                                                        <  1:3806971/91‑1 (MQ=255)

  tGGAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGgtagta                                                                                      >  2:449909/1‑91 (MQ=255)

  tGGAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTa                                                                                      >  1:2126616/1‑91 (MQ=255)

   ggAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTAt                                                                                     <  1:3383323/91‑1 (MQ=255)

   ggAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTAt                                                                                     <  2:1726605/91‑1 (MQ=255)

    gAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATc                                                                                    <  1:1003176/91‑1 (MQ=255)

     aaaaTTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCt                                                                                   <  2:3860954/91‑1 (MQ=255)

     aaaaTTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCt                                                                                   <  1:3863410/91‑1 (MQ=255)

      tgttaaggactaattctgtggatgtcttttaagaatataagatactATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCt                                                                                   >  2:280488‑M1/47‑91 (MQ=255)

       aaTTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTta                                                                                 <  1:2480726/91‑1 (MQ=255)

         ttattTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTtata                                                                               <  2:3799694/91‑1 (MQ=255)

         ttattTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTtata                                                                               <  1:2103836/91‑1 (MQ=255)

          tattTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTCTCAACTTTTGATGCGATAGTATCTTatat                                                                              >  1:3177110/1‑91 (MQ=255)

           attTGATATTTCATTTGACTGATTTTTTATGCAC‑AACAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATCGTATCTTATAtt                                                                             >  2:82943/1‑91 (MQ=255)

           attTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATAtt                                                                             >  1:235423/1‑91 (MQ=255)

           attTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATAtt                                                                             >  2:82861/1‑91 (MQ=255)

             ttGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCt                                                                           <  1:450721/91‑1 (MQ=255)

              tGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCtt                                                                          >  1:894560/1‑91 (MQ=255)

              tGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCtt                                                                          >  1:2347382/1‑91 (MQ=255)

                atatTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTaa                                                                        <  1:718881/91‑1 (MQ=255)

                atatTTCATTTAACTGATTTTTTATGCAC‑AACAAAATCGCCTCAAAAGCTGTATTTTCTACTTTTGATGCGCTAGTATCTTATATTCTCaa                                                                        >  2:18971/1‑91 (MQ=255)

                 tatTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTaaa                                                                       <  1:15774/91‑1 (MQ=255)

                  atTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTaaaa                                                                      >  1:70863/1‑91 (MQ=255)

                     tCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGAc                                                                   >  2:2577355/1‑91 (MQ=255)

                       aTTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACAt                                                                 <  1:3874533/91‑1 (MQ=255)

                       aTTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACAt                                                                 <  2:2471104/91‑1 (MQ=255)

                        tttGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATc                                                                >  2:2806400/1‑91 (MQ=255)

                        tttGACTGATTTTTTATGCAC‑AAAAAAATAGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATc                                                                >  2:209211/1‑91 (MQ=255)

                         ttGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATcc                                                               <  2:1282557/91‑1 (MQ=255)

                         ttGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATcc                                                               <  1:356985/91‑1 (MQ=255)

                          tGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATcat                                                              <  1:2641233/91‑3 (MQ=255)

                            aCTGATTTTTTATGCACAAAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCcac                                                             >  1:3272880/1‑91 (MQ=255)

                            aCTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAACGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCcaca                                                            >  2:621774/1‑91 (MQ=255)

                            aCTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCcaca                                                            >  2:1003426/1‑91 (MQ=255)

                            aCTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCcaca                                                            >  2:1074034/1‑91 (MQ=255)

                            aCTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCcaca                                                            >  1:1421170/1‑91 (MQ=255)

                            aCTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCcaca                                                            <  2:3078703/91‑1 (MQ=255)

                              tGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGa                                                          <  2:202772/91‑1 (MQ=255)

                                 ttttttATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAAtt                                                       <  2:2680851/91‑1 (MQ=255)

                                    tttATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGt                                                    <  1:2240162/91‑1 (MQ=255)

                                      tATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTcc                                                  >  1:1600629/1‑91 (MQ=255)

                                       aTGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCt                                                 >  2:3366855/1‑91 (MQ=255)

                                       aTGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCt                                                 <  1:1655942/91‑1 (MQ=255)

                                        tGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCtt                                                <  1:1683575/91‑1 (MQ=255)

                                        tGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCtt                                                >  2:1166701/1‑91 (MQ=255)

                                         gCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTa                                               >  1:88116/1‑91 (MQ=255)

                                         gCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTa                                               >  1:2448887/1‑91 (MQ=255)

                                         gCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTa                                               >  2:1460775/1‑91 (MQ=255)

                                         gCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTa                                               >  1:2794868/1‑91 (MQ=255)

                                          cac‑aAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTaa                                              <  2:499225/91‑1 (MQ=255)

                                           ac‑aAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAAc                                             <  2:805626/91‑1 (MQ=255)

                                           ac‑aAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAAc                                             <  2:819583/91‑1 (MQ=255)

                                              aaaaaaaTCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACAt                                           <  1:3220568/91‑1 (MQ=255)

                                               aaaaaaTCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACAtt                                          >  2:2196546/1‑91 (MQ=255)

                                               aaaaaaTCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACAtt                                          <  1:357858/91‑1 (MQ=255)

                                                 aaaaTCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTAc                                        <  2:1828062/91‑1 (MQ=255)

                                                   aaTCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTg                                      <  2:2904995/91‑1 (MQ=255)

                                                    ATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTCAAAGACATCCACAGAATTAGTCCTTAACATTACTGt                                     <  2:3118310‑M1/91‑1 (MQ=255)

                                                    ATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGt                                     <  1:3939717‑M1/91‑1 (MQ=255)

                                                     TCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTCGTCCTTACCCTTACTGtt                                    <  2:1624493‑M1/91‑1 (MQ=255)

                                                     TCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGtt                                    <  1:2891745‑M1/91‑1 (MQ=255)

                                                      CGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGttt                                   >  2:369189‑M1/1‑91 (MQ=255)

                                                       gcatcaaaagttgaaactacagcttttgaggcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTCCTGTTTg                                  >  1:1962848‑M2/36‑91 (MQ=255)

                                                       gcatcaaaagttgaaactacagcttttgaggcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTATTTg                                  >  2:546523‑M2/36‑91 (MQ=255)

                                                       GCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTg                                  >  1:1800849‑M1/1‑91 (MQ=255)

                                                       GCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTg                                  <  1:1658359‑M1/91‑1 (MQ=255)

                                                        CCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGc                                 >  1:274124‑M1/1‑91 (MQ=255)

                                                            aaaaGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTa                             >  1:523950/1‑91 (MQ=255)

                                                             aaaGCTGTAGTTTCAACTGTTGATGCGATAGTATCTTATATTCTTAAAGGACAGCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTAt                            <  2:3938778/91‑1 (MQ=255)

                                                               agttgaaactacagcttttgaggcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCa                          >  1:3769706‑M2/28‑91 (MQ=255)

                                                               aGCTGTAGTTTAAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCa                          <  1:58301/91‑1 (MQ=255)

                                                                gttgaaactacagcttttgaggcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCaa                         >  2:73278‑M2/27‑91 (MQ=255)

                                                                 ttgaaactacagcttttgaggcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCaat                        >  1:1177477‑M2/26‑91 (MQ=255)

                                                                 cTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCaat                        <  2:2228763/91‑1 (MQ=255)

                                                                  tgaaactacagcttttgatgcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCaata                       >  1:3736123‑M2/25‑91 (MQ=255)

                                                                  tGTAGTTTGAACTTTTGATGCGATAGTATCTGATATTCTTAAAAGACATCCACAGCATTAGTCCTTAACATTACTGTTTGCTTTATCcata                       <  2:1475671/91‑1 (MQ=255)

                                                                  tGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCaata                       >  1:657359/1‑91 (MQ=255)

                                                                   gTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCaataa                      >  2:272912/1‑91 (MQ=255)

                                                                           aaCTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTgg              >  2:2773977/1‑91 (MQ=255)

                                                                            aCTTTTGATGCGATAGGATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGc             <  2:3777089/91‑1 (MQ=255)

                                                                             cTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCg            <  1:2814496/91‑1 (MQ=255)

                                                                             cTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCg            <  1:49576/91‑1 (MQ=255)

                                                                              ttttGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCgg           <  1:981758/91‑1 (MQ=255)

                                                                               tttGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGt          >  1:2854156/1‑91 (MQ=255)

                                                                               tttGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGt          >  1:3481599/1‑91 (MQ=255)

                                                                                ttGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTa         >  2:3496971/1‑91 (MQ=255)

                                                                                ttGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTa         <  1:2317526/91‑1 (MQ=255)

                                                                                  gATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTAtt       >  2:3579853/1‑91 (MQ=255)

                                                                                  gATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTAtt       <  2:1631233/91‑1 (MQ=255)

                                                                                  gATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGAGGTAtt       >  1:127492/1‑91 (MQ=255)

                                                                                  gATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTACTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTAtt       >  1:3151477/1‑91 (MQ=255)

                                                                                   aTGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTAttt      >  1:103749/1‑91 (MQ=255)

                                                                                   aTGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTAttt      <  1:2067838/91‑1 (MQ=255)

                                                                                   aTGCGATAGTATCTTATATTCTTAAAAGACATCCACACAATTAGTCCTTAACATTACTGTTTGCTATATCAATAATGCGTTGGCGATAttt      >  1:3675489/1‑91 (MQ=255)

                                                                                    tGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTCTCAATAATGCGCTGGCGGTCTTTg     >  2:3290720/1‑91 (MQ=255)

                                                                                    tGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTg     <  2:1797509/91‑1 (MQ=255)

                                                                                    tGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGGTGGCGGTATTTg     <  1:3057742/91‑1 (MQ=255)

                                                                                     gcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGa    >  2:1254107‑M2/6‑91 (MQ=255)

                                                                                     gcgatAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGa    >  1:2915170‑M2/6‑91 (MQ=255)

GATGGAAAATTATTTGATATTTCATTTGACTGATTTTTTATGCAC‑AAAAAAATCGCCTCAAAAGCTGTAGTTTCAACTTTTGATGCGATAGTATCTTATATTCTTAAAAGACATCCACAGAATTAGTCCTTAACATTACTGTTTGCTTTATCAATAATGCGTTGGCGGTATTTGAAA  >  USA300TCH1516_ALE/1014958‑1015134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.