| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1032068 | 207 (1.020) | 11 (0.060) | 10/146 | NT | 5.4% | coding (1056/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN |
| ? | USA300TCH1516_ALE | = 1032096 | 197 (1.060) | coding (1084/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN | |||||
TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1031972‑1032068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtccacTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG < USA300TCH1516_ALE/1032096‑1032010 TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGT < 2:888489/91‑1TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGT > 1:1643941/1‑91TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGT > 2:2273883/1‑91 GGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTG < 2:1169346/91‑1 GGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTG < 2:170169/91‑1 GGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTG > 2:3409821/1‑91 GGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTG < 2:3853293/91‑1 GGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGT > 1:323471/1‑91 GGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGT > 1:323486/1‑91 GGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGT > 2:1459371/1‑91 GGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGT > 2:1193490/1‑91 GTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTC > 1:2191046/1‑91 GTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTC < 2:3392451/91‑1 GTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTC < 1:1901140/91‑1 GTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTC > 2:1860324/1‑91 TTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCC > 2:2871553/1‑91 TTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCC > 2:2719757/1‑91 TTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCC > 2:2109994/1‑91 TTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCC < 2:817319/91‑1 TTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCC > 1:1269962/1‑91 TACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCA > 2:942326/1‑91 TACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCA > 1:1547057/1‑91 TACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCA < 2:513587/91‑1 ACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCA < 1:774243/91‑1 CCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGG < 2:150675/91‑1 CATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGC < 1:2703061/91‑1 ATTTGCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCA < 2:2669794/91‑1 TTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCAC < 2:1842528/91‑1 TTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCAC < 2:3353306/91‑1 TTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACG < 2:1513169/91‑1 TCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTG < 1:1067074/91‑1 TTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCTCTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACA < 1:2162048/91‑1 CATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTAT < 2:2994878/91‑1 ATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATG < 1:943484/91‑1 ctggCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACAGGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGGAATAAT < 2:2518972/87‑1 TGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATT < 2:2988282/91‑1 TGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATT > 1:3322517/1‑91 TGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATT > 1:3485403/1‑91 TCCACTCAACCCCTTCTCTCCGTTCATAGGCCCGTGGACACGTGTTATATCATTATCAAATGCAAGGTCAATTGCATCACGTAATAATTGC > 2:3010915/1‑91 TCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGC > 2:3752270/1‑91 TCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGC > 1:3149552/1‑91 TCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGC > 2:1876380/1‑91 TCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGC < 1:646240/91‑1 TCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGACAATTGCATCAAGTAATAATTGC > 2:3009310/1‑91 CCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG < 1:303675/91‑1 CCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG < 2:3228728/91‑1 CCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG > 1:3057507/1‑91 CCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG > 1:2522624/1‑91 TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1031972‑1032068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtccacTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG < USA300TCH1516_ALE/1032096‑1032010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |