| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1032068 | 207 (1.020) | 11 (0.060) | 10/146 | NT | 5.4% | coding (1056/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN |
| ? | USA300TCH1516_ALE | = 1032096 | 197 (1.060) | coding (1084/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN | |||||
Only 100 of 277 total aligned reads displayed.
AAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGAT > USA300TCH1516_ALE/1031980‑1032158 | aaGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGt > 2:2475296/1‑91 (MQ=255) aGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTg < 1:2998106/91‑1 (MQ=255) aGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTg < 2:2537988/91‑1 (MQ=255) gATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGc < 2:1239313/91‑1 (MQ=255) gATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGc < 1:3830271/91‑1 (MQ=255) aTTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGcc < 1:14535/91‑1 (MQ=255) ttAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTa > 1:1259743/1‑91 (MQ=255) ttAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTa < 1:2380605/91‑1 (MQ=255) tAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTAt < 2:1419332/91‑1 (MQ=255) aGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATg > 2:2677470/1‑91 (MQ=255) tCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGaa > 1:308081/1‑91 (MQ=255) tCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGaa < 1:2876236/91‑1 (MQ=255) cTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAAc < 1:1050795/91‑1 (MQ=255) tGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTAATAATGATATAACATGTGTCCACGTGCCTATGAAca > 2:3915762/1‑90 (MQ=255) gTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACgg > 2:2233072/1‑91 (MQ=255) tCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGga > 1:144151/1‑91 (MQ=255) tCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGga > 2:2994047/1‑91 (MQ=255) tCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGga > 1:2698232/1‑91 (MQ=255) aaaCACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGgaga > 1:3311046/1‑91 (MQ=255) aaaCACATCCATTTTCGCAATTACTACATGATGCAATTCACCTTGCCTTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGgaga > 1:3131767/1‑91 (MQ=255) aaCACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGgagag < 1:3231068/91‑1 (MQ=255) aaCACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGgagag > 1:3952721/1‑91 (MQ=255) acaTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAg > 1:3619432/1‑91 (MQ=255) acaTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAg < 2:518418/91‑1 (MQ=255) acaTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAg < 2:1849736/91‑1 (MQ=255) caTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgg < 2:3464355/91‑1 (MQ=255) caTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgg < 2:1572432/91‑1 (MQ=255) aTCCATTTTCGCAATTATTACATGATCCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAggg > 2:2246472/1‑91 (MQ=255) tCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgggg < 1:1648985/91‑1 (MQ=255) tCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATCATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgggg < 1:3420668/91‑1 (MQ=255) ccATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGt < 2:2403638/91‑1 (MQ=255) aTTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTg > 2:3720918/1‑91 (MQ=255) aTTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTg > 2:1781016/1‑91 (MQ=255) ttttCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACtcaaccccttctctccgttcataggcac < 2:3353306‑M1/91‑29 (MQ=255) ttttCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGa > 2:2651900/1‑91 (MQ=255) tttCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACtcaaccccttctctccgttcataggcacg < 2:1513169‑M1/91‑30 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg > 1:3057507‑M2/1‑87 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg > 1:2522624‑M2/1‑87 (MQ=255) gCAATTATTACGTGATGCAATTGACCTTGCATTTGATAATGATATAACACGTGTCCACGGGCCTATGAACGGAGAGAAGGGGTTGAgtgga > 2:3010915‑M2/1‑86 (MQ=255) gCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgga > 2:3752270‑M2/1‑86 (MQ=255) gCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgga > 2:1876380‑M2/1‑86 (MQ=255) gCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgga < 1:646240‑M2/91‑6 (MQ=255) gCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgga > 1:3149552‑M2/1‑86 (MQ=255) attattACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAg > 1:44851/1‑91 (MQ=255) tattaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGAt < 2:2851211/91‑1 (MQ=255) attaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGAtt > 1:2566744/1‑91 (MQ=255) ttaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTc > 1:3194009/1‑91 (MQ=255) aCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGa < 1:2134396/91‑1 (MQ=255) aCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGa > 1:604728/1‑91 (MQ=255) aCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGa > 1:1944054/1‑91 (MQ=255) cATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttat < 1:943484‑M2/91‑16 (MQ=255) gatgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATg < 2:3163436/91‑1 (MQ=255) atgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGa < 1:2280410/91‑1 (MQ=255) atgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGa < 1:3327509/91‑1 (MQ=255) gCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAg > 2:1312612/1‑91 (MQ=255) gCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAg < 1:2251708/91‑1 (MQ=255) gCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAg < 2:1661627/91‑1 (MQ=255) aaTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTCTGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGACATGAAGAt > 2:1165601/1‑91 (MQ=255) aaTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGAt > 2:94233/1‑91 (MQ=255) aaTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGAt < 1:796958/91‑1 (MQ=255) aTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGGAGAtt > 2:3653063/1‑91 (MQ=255) aTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGAtt > 2:2046279/1‑91 (MQ=255) aTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGAtt < 2:3602614/91‑1 (MQ=255) tgaattGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGt > 2:758196/5‑91 (MQ=255) cACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGt > 2:3213414/1‑91 (MQ=255) cTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATc < 1:192930/91‑1 (MQ=255) cTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATc < 2:3163136/91‑1 (MQ=255) ttGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCa < 2:3108217/91‑1 (MQ=255) tGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCAt < 1:2442087/91‑1 (MQ=255) tGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCAt < 2:817997/91‑1 (MQ=255) cATTTGATAATGATATAACATGTGTCCACGTGCCTATGAAAGGAGAGAAGGGGTTGAGTGGACAGCTTCGAAATGAAGATTTGTATCATGc > 2:3258170/1‑91 (MQ=255) tGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAc < 1:161343/91‑1 (MQ=255) gATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCGTAcc < 1:3124651/91‑1 (MQ=255) aTAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAccc < 1:2821499/91‑1 (MQ=255) aTAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAccc > 1:3171784/1‑91 (MQ=255) aTAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAccc > 2:326475/1‑91 (MQ=255) aTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCata > 2:2611656/1‑91 (MQ=255) aTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCata < 1:3693966/91‑1 (MQ=255) tGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCatat < 2:2515166/91‑1 (MQ=255) gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc > 2:191423/1‑91 (MQ=255) ataACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAg > 1:1244165/1‑91 (MQ=255) taACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGa > 1:3763800/1‑91 (MQ=255) taACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGa < 2:2374694/91‑1 (MQ=255) aaCATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGAt > 2:109383/1‑91 (MQ=255) cATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATaa > 1:2219810/1‑91 (MQ=255) aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAg > 1:3537925/1‑91 (MQ=255) tgtgTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgaggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataa < 1:2162048‑M2/91‑55 (MQ=255) tgtgTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGc > 2:2998004/1‑91 (MQ=255) tgtgTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGc > 1:856211/1‑91 (MQ=255) tgtgTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGc < 2:3728829/91‑1 (MQ=255) ctggccactcaaccccttctctccgttcataggcacgtggacacaggttatatcattatcaaatgcaaggtgaattgcatcatggaataat < 2:2518972‑M1/87‑84 (MQ=255) tgtCCACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataatt < 2:2988282‑M1/91‑85 (MQ=255) tgtCCACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataatt > 1:3485403‑M1/1‑7 (MQ=255) tgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCa > 1:572246/1‑91 (MQ=255) tCCACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggacaattgcatcaagtaataattgc > 2:3009310‑M1/1‑5 (MQ=255) ccACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcg < 1:303675‑M1/91‑88 (MQ=255) ccACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATg < 1:679094/91‑1 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcga < 1:1067074‑M2/91‑61 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg > 2:2304640/1‑91 (MQ=255) ccGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGa < 2:441146/90‑1 (MQ=255) | AAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGAT > USA300TCH1516_ALE/1031980‑1032158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |