BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1032068	207 (1.020)	11 (0.060)	10/146	NT	5.4%	coding (1056/1515 nt)	yfkN_2	Trifunctional nucleotide phosphoesterase protein YfkN
*	?	USA300TCH1516_ALE	= 1032096	197 (1.060)	11 (0.060)	10/146	NT	5.4%	coding (1084/1515 nt)	yfkN_2	Trifunctional nucleotide phosphoesterase protein YfkN

Only 100 of 250 total aligned reads displayed.

TTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAG  >  USA300TCH1516_ALE/1032006‑1032186

     gCAATTATTACGTGATGCAATTGACCTTGCATTTGATAATGATATAACACGTGTCCACGGGCCTATGAACGGAGAGAAGGGGTTGAgtgga                                                                                       >  2:3010915‑M2/1‑86 (MQ=255)

     gCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgga                                                                                       <  1:646240‑M2/91‑6 (MQ=255)

       aaTTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggaca                                                                                     >  1:3322517‑M2/1‑84 (MQ=255)

       aaTTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggaca                                                                                     <  2:2988282‑M2/91‑8 (MQ=255)

        attattACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAg                                                                                    >  1:44851/1‑91 (MQ=255)

        attatgACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAg                                                                                    <  2:3202303/91‑1 (MQ=255)

          tattaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGAt                                                                                  <  2:2851211/91‑1 (MQ=255)

          tattaCATGATGCAATTCACCTTGCATTTGATAATGATATAACAGGTGTCCACTTGCCTATGAACGGTGAGAAGGGGTTGAGTGGACAGAt                                                                                  <  1:3157370/91‑1 (MQ=255)

           attaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGAtt                                                                                 >  1:2566744/1‑91 (MQ=255)

           attaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGCAGAGAAGGGGTTGAGTGGACAGAtt                                                                                 >  1:3667315/1‑91 (MQ=255)

            ttaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTc                                                                                >  1:3194009/1‑91 (MQ=255)

              aCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGa                                                                              >  2:3163421/1‑91 (MQ=255)

              aCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGa                                                                              >  2:2495800/1‑91 (MQ=255)

               cATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttat                                                                             <  1:943484‑M2/91‑16 (MQ=255)

                atgatgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGaaa                                                                            >  2:786761/1‑91 (MQ=255)

                atgatgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGaaa                                                                            >  1:1252890/1‑91 (MQ=255)

                  gatgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATg                                                                          <  2:3795201/91‑1 (MQ=255)

                   atgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGa                                                                         <  1:2280410/91‑1 (MQ=255)

                     gCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAg                                                                       >  2:1312612/1‑91 (MQ=255)

                      cAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGa                                                                      <  2:1745758/91‑1 (MQ=255)

                       aaTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTCTGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGACATGAAGAt                                                                     >  2:1165601/1‑91 (MQ=255)

                       aaTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTAGAGTGGACATATTCGAAATGAAGAt                                                                     >  2:3425645/1‑91 (MQ=255)

                        aTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGGAGAtt                                                                    >  2:3653063/1‑91 (MQ=255)

                        aTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGAtt                                                                    >  2:2046279/1‑91 (MQ=255)

                        aTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGAtt                                                                    <  2:3602614/91‑1 (MQ=255)

                        aTTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAAAAGGGGTTGAGTGGACAGATTCGAAATGAAGAtt                                                                    >  1:390810/1‑91 (MQ=255)

                        aTTCACCTTGCATTGGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGAtt                                                                    <  2:2555250/91‑1 (MQ=255)

                           tgaattGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGt                                                                 >  2:758196/5‑91 (MQ=255)

                             ccTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTAt                                                               <  1:2180006/91‑1 (MQ=255)

                               ttGGATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGGATCa                                                             <  1:3116323/91‑1 (MQ=255)

                                tGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCAt                                                            >  2:3737695/1‑91 (MQ=255)

                                tGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCAt                                                            <  1:2442104/91‑1 (MQ=255)

                                 gCATTTGATAATGATATAACATGTGTCCACGTGCCTAGGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATg                                                           >  1:3334229/1‑91 (MQ=255)

                                  cATTTGATAATGATATAACATGTGTCCACGTGCCTATGAAAGGAGAGAAGGGGTTGAGTGGACAGCTTCGAAATGAAGATTTGTATCATGc                                                          >  2:3258170/1‑91 (MQ=255)

                                   aTTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCa                                                         <  1:142517/91‑1 (MQ=255)

                                    tttGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCAt                                                        <  2:2993595/91‑1 (MQ=255)

                                    tttGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCAt                                                        >  1:2592830/1‑91 (MQ=255)

                                     ttGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATa                                                       >  1:518986/1‑91 (MQ=255)

                                        aTAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAccc                                                    >  2:326475/1‑91 (MQ=255)

                                        aTAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAccc                                                    >  1:3171633/1‑91 (MQ=255)

                                           aTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCata                                                 <  1:3693966/91‑1 (MQ=255)

                                             gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc                                               <  2:2516460/91‑1 (MQ=255)

                                             gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc                                               >  2:191423/1‑91 (MQ=255)

                                               tataACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCa                                             <  2:1103958/91‑1 (MQ=255)

                                                ataACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAg                                            >  1:1606818/1‑91 (MQ=255)

                                                 taACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGa                                           >  1:3763800/1‑91 (MQ=255)

                                                 taACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGa                                           <  2:2374694/91‑1 (MQ=255)

                                                   aCATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCattgg                                         <  1:1622849/91‑5 (MQ=255)

                                                   aCATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATa                                         >  1:2840923/1‑91 (MQ=255)

                                                    cATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATaa                                        >  1:2219810/1‑91 (MQ=255)

                                                     aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAg                                       >  1:3537925/1‑91 (MQ=255)

                                                      tgtgTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGc                                      >  1:856211/1‑91 (MQ=255)

                                                      tgtgTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGc                                      >  2:2998004/1‑91 (MQ=255)

                                                       gtgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGGTAAGcc                                     <  1:3072708/91‑1 (MQ=255)

                                                       gtgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGcc                                     >  1:586254/1‑91 (MQ=255)

                                                       gtgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGcc                                     >  1:2998115/1‑91 (MQ=255)

                                                           ccACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATg                                 <  1:679138/91‑1 (MQ=255)

                                                            cACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcga                                <  1:1067074‑M2/91‑61 (MQ=255)

                                                             aCGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGa                               <  2:441121/91‑1 (MQ=255)

                                                             aCGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGa                               >  1:1948253/1‑91 (MQ=255)

                                                              cGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcgaaa                              <  2:1513169‑M2/91‑63 (MQ=255)

                                                               gTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcgaaaa                             <  2:1842528‑M2/91‑64 (MQ=255)

                                                               gTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGata                             <  2:1081223/91‑1 (MQ=255)

                                                               gTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGata                             >  2:3712304/1‑91 (MQ=255)

                                                                tGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGatat                            <  2:1028858/91‑1 (MQ=255)

                                                                tGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGatat                            >  1:2106052/1‑91 (MQ=255)

                                                                tGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGatat                            >  2:2613756/1‑91 (MQ=255)

                                                                 gCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATg                           >  2:1335625/1‑91 (MQ=255)

                                                                  ccTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGTCAATGGATATGa                          <  1:3028095/91‑1 (MQ=255)

                                                                     aTGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACaa                       >  1:320393/1‑91 (MQ=255)

                                                                     aTGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACaa                       >  2:2298629/1‑91 (MQ=255)

                                                                      tGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcgaaaatggatgt                      <  1:774243‑M2/91‑71 (MQ=255)

                                                                      tGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAAt                      <  1:2789016/91‑1 (MQ=255)

                                                                      tGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAAt                      >  1:1922827/1‑91 (MQ=255)

                                                                      tGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAAt                      >  1:2916662/1‑91 (MQ=255)

                                                                         aCGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAg                   <  1:3480099/91‑1 (MQ=255)

                                                                         aCGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGAATACCCATATCCAGATAAGCCAATGGATATGACAATTAg                   >  2:2707416/1‑91 (MQ=255)

                                                                          cGGAGAGAAGGGGTTGTGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGt                  >  2:832220/1‑91 (MQ=255)

                                                                             agagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGt               <  1:1264437/91‑1 (MQ=255)

                                                                             agagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGt               <  1:1871080/91‑1 (MQ=255)

                                                                             agagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGt               >  1:2720009/1‑91 (MQ=255)

                                                                              gagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTc              >  1:2371837/1‑91 (MQ=255)

                                                                               agaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCa             <  2:444432/91‑1 (MQ=255)

                                                                                 aaGGGGTTGAGTGGACAGATTCGAAATGCAGATTTGTATCATGCATACCCATATCCAGCTAAGCCAATGGATATGACAATTAGCGGTCaaa           >  2:551534/1‑91 (MQ=255)

                                                                                 aaGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCaaa           >  2:2650183/1‑91 (MQ=255)

                                                                                  aGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCaaaa          >  1:3132829/1‑91 (MQ=255)

                                                                                    gggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAACata        >  1:3068197/1‑91 (MQ=255)

                                                                                    gggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAata        <  1:1718596/91‑1 (MQ=255)

                                                                                     ggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAatat       <  2:1638920/91‑1 (MQ=255)

                                                                                     ggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAatat       >  2:1432661/1‑91 (MQ=255)

                                                                                     ggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAatat       >  2:1431609/1‑91 (MQ=255)

                                                                                     ggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAatat       >  2:2705664/1‑91 (MQ=255)

                                                                                      gTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATc      >  1:1186711/1‑91 (MQ=255)

                                                                                       ttGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCa     <  2:3560658/91‑1 (MQ=255)

                                                                                       ttGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCa     <  1:1701392/91‑1 (MQ=255)

                                                                                        tGAGTGTACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCaa    <  2:2775833/91‑1 (MQ=255)

                                                                                        tGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCaa    >  1:2512687/1‑91 (MQ=255)

                                                                                         gAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCaaa   <  2:856211/91‑1 (MQ=255)

                                                                                          aGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAg  >  2:2232915/1‑91 (MQ=255)

                                                                                          aGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAg  >  1:150717/1‑91 (MQ=255)

TTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAG  >  USA300TCH1516_ALE/1032006‑1032186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.