New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1034042 =130 (0.640)19 (0.120) 10/130 NT 14.5% intergenic (+31/+50) USA300TCH1516_00960/USA300TCH1516_00961 hypothetical protein/Lipoate‑‑protein ligase 1
?USA300TCH1516_ALE 1034086 = 119 (0.720)intergenic (+75/+6) USA300TCH1516_00960/USA300TCH1516_00961 hypothetical protein/Lipoate‑‑protein ligase 1

Only 100 of 101 total aligned reads displayed.

ATATCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/1034146‑1034042
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagaatagtcctttAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTTCTA  >  USA300TCH1516_ALE/1034086‑1034174
                                                                                                                                                                                                   
ATATCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTT                                                                                                         <  2:3336996/91‑1
  ATCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAA                                                                                                       >  1:2263080/1‑91
   TCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAG                                                                                                      >  1:365226/1‑91
   TCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAG                                                                                                      <  1:3904737/91‑1
   TCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAG                                                                                                      <  2:3823178/91‑1
   TCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAG                                                                                                      <  2:3822756/91‑1
   TCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATGAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAG                                                                                                      <  2:618299/91‑1
    CATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGA                                                                                                     >  1:440795/1‑91
    CATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGA                                                                                                     >  2:2072603/1‑91
    CATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGA                                                                                                     <  1:2945452/91‑1
    CATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGA                                                                                                     >  1:2322371/1‑91
    CATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGA                                                                                                     >  2:384073/1‑91
     ATTATTTCGGTGACATAGATAGACATGAATTAATTATATTAATGTCATAAACGATTAAAGGACTATTCTTAGCTGTATGAGATGTTAAGAA                                                                                                    <  2:1746573/91‑1
      TTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAAT                                                                                                   >  1:1637468/1‑91
      TTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAAT                                                                                                   <  2:1832871/91‑1
       TATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATA                                                                                                  <  2:1996701/91‑1
        ATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAG                                                                                                 <  2:2735486/91‑1
        ATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAG                                                                                                 <  2:2775286/91‑1
        ATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAG                                                                                                 <  2:1955081/91‑1
           TCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCC                                                                                              >  1:888468/1‑91
           TCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCC                                                                                              >  1:1473365/1‑91
            CGGTGACATAGATAGACATGAATTAATTAGTTTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCT                                                                                             >  2:2890357/1‑91
            CGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAATGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCT                                                                                             <  2:3551167/91‑1
             GGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTT                                                                                            >  2:1951288/1‑91
             GGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTT                                                                                            >  1:2674445/1‑91
             GGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTT                                                                                            >  1:2536124/1‑91
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAATGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           >  2:3469637/1‑91
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           <  1:2904294/91‑1
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           <  1:2905758/91‑1
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           >  1:262529/1‑91
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           >  1:262467/1‑91
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           <  1:2951994/91‑1
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           <  1:2952224/91‑1
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           >  2:425141/1‑91
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           >  2:425106/1‑91
              GTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT                                                                                           <  1:2243774/91‑1
                     AGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTT                                                                                    >  2:2217329/1‑91
                             ATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTAACATCTCATACATGTAAGAATAGTCCTTTAATCGTTTATGACAT                                                                            <  2:3493639/91‑1
                                                       ACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTA                                                  >  1:1443823/1‑91
                                                                  ACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAA                                       >  1:1357955/1‑91
                                                                    TATTCTTACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATA                                     >  2:3013330/1‑91
                                                                       TCTTACATGTATGAGATGTTAAGAATAGTCCTTTAATTGTTTATGACATTAATCTAATTAATTCATTTCTATCTATGTCACCGAAATGATG                                  >  2:2781572/1‑91
                                                                        CTTACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGA                                 >  1:1431537/1‑91
                                                                          TACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATA                               >  2:2711323/1‑91
                                                                          TACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATA                               >  2:751888/1‑91
                                                                          TACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATA                               >  1:1766871/1‑91
                                                                          TACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATA                               >  2:1651778/1‑91
                                                                          TACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATA                               >  2:2439879/1‑91
                                                                          TACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATA                               >  2:2439945/1‑91
                                                                          TACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATA                               >  1:3270430/1‑91
                                                                          TACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATA                               >  2:2711307/1‑91
                                                                            ACATGTATGAGATGTTAAGAATAGTCCTTTTATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATct                              >  2:3613399/1‑89
                                                                            ACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATAT                              >  1:1060669/1‑91
                                                                            ACATGTATGAGATGTTAAGAATAGTCCTTTAATCGTTTATCACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATAT                              >  2:3252824/1‑91
                                                                                   TGAGATGTTAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCAT                       >  2:1269305/1‑91
                                                                                           TAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGAT               >  2:3161590/1‑91
                                                                                           TAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGAT               >  2:3502541/1‑91
                                                                                           TAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGAT               >  2:2916658/1‑91
                                                                                           TAAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGAT               >  2:3161465/1‑91
                                                                                            AAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATA              >  1:1383379/1‑91
                                                                                            AAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATA              >  1:1383528/1‑91
                                                                                            AAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATA              <  1:2311833/91‑1
                                                                                            AAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATA              <  2:203243/91‑1
                                                                                            AAGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATA              <  1:719252/91‑1
                                                                                             AGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAG             >  1:3844556/1‑91
                                                                                             AGAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAG             >  2:1231551/1‑91
                                                                                              GAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGT            <  1:2571400/91‑1
                                                                                              GAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGT            <  2:3178087/91‑1
                                                                                              GAATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGT            >  1:3337767/1‑91
                                                                                               AATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTG           >  2:2043261/1‑91
                                                                                               AATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTG           <  2:1638011/91‑1
                                                                                               AATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTG           >  2:1438987/1‑91
                                                                                                ATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGC          <  2:1598435/91‑1
                                                                                                ATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGC          <  2:224742/91‑1
                                                                                                ATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGC          <  1:198174/91‑1
                                                                                                ATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGC          <  1:3776788/91‑1
                                                                                                ATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGC          >  1:3849113/1‑91
                                                                                                ATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGC          <  2:224627/91‑1
                                                                                                ATAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGC          <  2:2232188/91‑1
                                                                                                 TAGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCT         >  1:3184633/1‑91
                                                                                                  AGTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTT        >  1:177462/1‑91
                                                                                                   GTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTC       <  1:3872906/91‑1
                                                                                                   GTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTC       <  1:2914620/91‑1
                                                                                                   GTCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTC       <  2:67848/91‑1
                                                                                                    TCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCT      <  1:3919549/91‑1
                                                                                                    TCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCT      >  2:1556836/1‑91
                                                                                                    TCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCT      >  1:3730769/1‑91
                                                                                                    TCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCT      <  2:732812/91‑1
                                                                                                    TCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCT      <  1:1896999/91‑1
                                                                                                    TCCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCT      >  2:221604/1‑91
                                                                                                     caTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTACTT     <  2:225492/89‑1
                                                                                                     CCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATTTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTT     <  2:199753/91‑1
                                                                                                     CCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTT     <  1:2188811/91‑1
                                                                                                     CCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATCATATAAATCATATTCTGATAGTGCTTCTT     >  1:3166027/1‑91
                                                                                                     CCTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATCATATAAATCATATTCTGATAGTGCTTCTT     >  1:2186231/1‑91
                                                                                                      CTTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTTC    <  2:871305/91‑1
                                                                                                       TTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTTCT   >  2:3875196/1‑91
                                                                                                       TTTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTTCT   >  2:867642/1‑91
                                                                                                        TTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTTCTA  >  1:1659755/1‑91
                                                                                                        TTAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTTCTA  >  1:1483937/1‑91
                                                                                                                                                                                                   
ATATCATTATTTCGGTGACATAGATAGACATGAATTAATTAGATTAATGTCATAAACGATTAAAGGACTATTCTTACATGTATGAGATGTTAAGAATAGTCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/1034146‑1034042
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagaatagtcctttAATCGTTTATGACATTAATCTAATTAATTCATGTCTATCTATGTCACCGAAATAATGATATAAATCATATTCTGATAGTGCTTCTTCTA  >  USA300TCH1516_ALE/1034086‑1034174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.