| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1040370 | 198 (0.970) | 9 (0.050) | 7/132 | NT | 5.3% | intergenic (+31/+57) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1040397 | 161 (0.960) | intergenic (+58/+30) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1040267‑1040370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaagccaatcaaACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTA < USA300TCH1516_ALE/1040397‑1040308 TGATATGGCTATTGCAAATCAATGTGACGTAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATT < 1:3171009/91‑1TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATT > 2:3088257/1‑91TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATT > 2:3088400/1‑91TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATT > 2:586863/1‑91TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATT > 1:2296708/1‑91TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATT < 2:697035/91‑1TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATT < 2:698162/91‑1 GATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTA > 1:1064303/1‑91 GATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTA < 2:3167893/91‑1 ATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAA < 2:2643371/91‑1 ATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAA < 1:2094235/91‑1 TATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAA > 1:247960/1‑91 TATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAA > 2:2468535/1‑91 TATGGCTAATGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAA > 2:2565837/1‑91 ATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAA > 1:1823872/1‑91 TGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAG < 2:3619566/91‑1 GGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGC < 1:2545239/91‑1 GGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGC < 1:2545109/91‑1 GGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGC > 2:2259553/1‑91 GGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGC < 1:1933431/91‑1 GGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGC > 2:2259592/1‑91 CTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATACAATTAAAAGCCA < 1:3033457/91‑1 CTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCA > 1:3940226/1‑91 CTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCA > 1:1115391/1‑91 CTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCA > 2:1086467/1‑91 CTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCA > 1:3482667/1‑91 CTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCA > 2:3303770/1‑91 CTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCA > 1:1649851/1‑91 CTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCA > 2:3688370/1‑91 TATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAA < 2:2380689/91‑1 ATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAAT > 1:1241534/1‑91 ATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAAT > 1:1164253/1‑91 TGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCA < 2:3108862/91‑1 TGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCA < 2:14101/91‑1 TGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCA < 2:14862/91‑1 GCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAA > 1:1050984/1‑91 ATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCC < 1:636981/91‑1 AGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT < 1:1232689/91‑1 GAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTG < 1:2747952/91‑1 GAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTG < 1:902199/91‑1 ACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGAT < 2:1239548/91‑1 ACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGAT < 1:3594680/91‑1 AGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTG < 1:153769/91‑1 GAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTT < 2:2377134/91‑1 AAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA < 2:2075868/91‑1 AAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTC > 2:2612774/1‑91 AAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTC > 2:2493966/1‑91 AAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTC < 1:3709315/91‑1 AAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTC > 1:2006521/1‑91 AAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTC > 1:570176/1‑91 AAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTC > 1:450013/1‑91 AAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTC > 1:449785/1‑91 AAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCT > 1:110777/1‑91 AAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTATCT > 1:3559887/1‑91 AAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTA > 2:2969423/1‑91 AGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTAT < 2:810282/91‑1 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATA > 2:3417986/1‑91 CCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATAC < 1:2632640/91‑1 CCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATAC < 2:2393462/91‑1 CCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATAC < 1:3820589/91‑1 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACT < 2:2068915/91‑1 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACT > 1:2762315/1‑91 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACT > 2:352110/1‑91 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACT < 2:2068990/91‑1 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACT > 2:2430456/1‑91 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTCTTGGATATCACATAGATGCTACTTTTCTATACT > 2:1936432/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCGCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGT < 1:2186353/91‑1 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGT > 2:1338349/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGT > 2:1853371/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGT < 1:3517220/91‑1 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGT > 1:320591/1‑91 ATCAAACGGAGTGTCGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGT > 2:176497/1‑91 TCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTT < 1:862/91‑1 TCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTT > 2:2724361/1‑91 TCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTT < 2:2293943/91‑1 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTC < 2:3176791/91‑1 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTC < 1:3638896/91‑1 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTC > 1:581581/1‑91 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTC > 1:582853/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCT > 2:3412385/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCT > 1:2317626/1‑91 AACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTA > 1:3175268/1‑91 AACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTA > 2:2863207/1‑91 AACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTA < 2:1037949/91‑1 AACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTA < 1:1841175/91‑1 AACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTA > 1:1062528/1‑91 AACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACGTTTCTATACTGTTCTA > 2:3778698/1‑91 TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1040267‑1040370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaagccaatcaaACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTA < USA300TCH1516_ALE/1040397‑1040308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |