| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1040370 | 198 (0.970) | 9 (0.050) | 7/132 | NT | 5.3% | intergenic (+31/+57) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1040397 | 161 (0.960) | intergenic (+58/+30) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
Only 100 of 312 total aligned reads displayed.
TTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGT > USA300TCH1516_ALE/1040307‑1040487 | ttAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGt < 1:2462609/91‑1 (MQ=255)ttAGAACAGTATAGAAAAGTAGAATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGt > 2:621562/1‑91 (MQ=255) tAGAACAGTATAGAAACGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTt > 2:3778698‑M2/1‑90 (MQ=255) tAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTt > 2:2863207‑M2/1‑90 (MQ=255) tAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTt < 2:1037949‑M2/91‑2 (MQ=255) ctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGttt > 1:2013500‑M1/49‑91 (MQ=255) ctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGttt > 1:9241‑M1/49‑91 (MQ=255) ctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGttt > 2:2487255‑M1/49‑91 (MQ=255) aGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTtt > 1:2317626‑M2/1‑89 (MQ=255) aGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTtt > 2:3412385‑M2/1‑89 (MQ=255) tttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTg > 2:3484954‑M1/48‑91 (MQ=255) gAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttg < 2:3176791‑M2/91‑4 (MQ=255) gAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttg > 1:581581‑M2/1‑88 (MQ=255) aaCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttga > 2:2724361‑M2/1‑87 (MQ=255) tttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAt > 1:360402‑M1/46‑91 (MQ=255) aCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgat > 2:1853371‑M2/1‑86 (MQ=255) aCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGCGAAATGTTGACTTCAACACTCCGTttgat < 1:2186353‑M2/91‑6 (MQ=255) tttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAAGCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTg > 1:1814843‑M1/44‑91 (MQ=255) aGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattg < 2:2068915‑M2/91‑8 (MQ=255) aGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattg > 1:2762315‑M2/1‑84 (MQ=255) gTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattgg < 1:3820589‑M2/91‑9 (MQ=255) tcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGc > 1:1119959‑M1/42‑91 (MQ=255) ataGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattggct < 2:810282‑M2/91‑11 (MQ=255) taGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattggctt > 2:2969423‑M2/1‑80 (MQ=255) agtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCtt > 2:1665649‑M1/40‑91 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattggctttt > 1:449785‑M2/1‑78 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattggctttt < 1:3709315‑M2/91‑14 (MQ=255) aaaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat < 2:2280382/91‑1 (MQ=255) aaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtata < 1:810007/91‑1 (MQ=255) aGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATAc < 1:3765014/91‑1 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg > 1:621488/1‑91 (MQ=255) cATCTATGTGATATACAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTgtgt > 2:3921226/1‑91 (MQ=255) aTCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACGCTCCGTTTGATTGGCTTTTATACTGTGtt > 1:3167329/1‑91 (MQ=255) aTCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGtt > 2:1553298/1‑91 (MQ=255) tCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTa < 1:2700010/91‑1 (MQ=255) tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt < 1:2341358/91‑1 (MQ=255) aTGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTa > 1:1950679/1‑91 (MQ=255) aTGAGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTGACTa < 1:3121449/91‑1 (MQ=255) ttcataacttagtaacacagtaTAAAAGCCAATGAATGGGAAATGTTGACTTCAACACTGCGTTTGATTGGCTTTTATACTGTGTTACTaa > 1:3508747‑M1/23‑91 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa < 1:3886852/91‑1 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa < 1:2946451/91‑1 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa > 2:1747162/1‑91 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa > 2:1683691/1‑91 (MQ=255) gtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAg < 2:514953/91‑1 (MQ=255) tgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGt < 2:2324804/91‑1 (MQ=255) gATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGCAATGTTGACTTCACCACTCCGTTTGATAGGCTTTTATACTGTGTTACTAAGtt > 1:3681989/1‑91 (MQ=255) atCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATg > 1:2639680/1‑91 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa > 1:707301/1‑91 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa > 1:3905191/1‑91 (MQ=255) ccAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGaa > 1:2116458/1‑91 (MQ=255) aaaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAg > 1:2405621/1‑91 (MQ=255) aaaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAg > 1:1422397/1‑91 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 2:1211552/91‑1 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 1:877259/91‑1 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 1:1606891/91‑1 (MQ=255) aaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTa < 1:3046713/91‑1 (MQ=255) aaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTa < 1:3403524/91‑1 (MQ=255) aTAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaaca < 2:1499017/91‑1 (MQ=255) tAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaacaa > 1:2865535/1‑91 (MQ=255) aaaaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaacaac < 1:2365686/91‑1 (MQ=255) aaaaTTAAAAGCCAATCAATGGGAAAGGTTGACTGCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaacaac < 2:475942/91‑1 (MQ=255) aaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg > 1:3759680/1‑91 (MQ=255) aaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg > 2:1810060/1‑91 (MQ=255) ttAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCa < 1:2201397/91‑1 (MQ=255) TAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCaa < 1:1141312‑M1/91‑1 (MQ=255) TAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCaa > 1:3520706‑M1/1‑91 (MQ=255) TAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACAGCaa > 2:1085990‑M1/1‑91 (MQ=255) AAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAc > 1:1561264‑M1/1‑91 (MQ=255) AAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACt > 2:2423282‑M1/1‑91 (MQ=255) GCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑a < 2:180487‑M1/91‑1 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aa < 1:2289695‑M1/91‑1 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aa > 1:3240615‑M1/1‑91 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aa > 1:179996‑M1/1‑91 (MQ=255) CAAGCAATGGGAAATGTTGACTTCAACACACCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaa > 2:2659979‑M1/1‑91 (MQ=255) ATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaaaa < 1:1902897‑M1/91‑1 (MQ=255) ATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaaaa < 1:2546811‑M1/91‑1 (MQ=255) ATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaaaa < 2:1476666‑M1/91‑1 (MQ=255) aatGGGAAATGTTGACTTCAACACTCCGTttgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgttct < 1:1232689‑M2/91‑63 (MQ=255) AATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAg < 1:3611528‑M1/91‑1 (MQ=255) ATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGc < 1:2243552‑M1/91‑1 (MQ=255) gggAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAAAGAAAAAAAA‑AAAAAAAGCaa < 2:2142867/91‑1 (MQ=255) gAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAata < 1:3773161/91‑1 (MQ=255) gAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAata > 1:1042657/1‑91 (MQ=255) aaaTGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAatat > 2:1120170/1‑91 (MQ=255) aaaTGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAatat < 2:1431805/91‑1 (MQ=255) ttGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataataa > 1:2429002/1‑91 (MQ=255) tGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTCTGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataataat > 2:2555396/1‑91 (MQ=255) gACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAATG‑AAAAAAAGCAATataataata < 2:1398264/91‑1 (MQ=255) aCTTCAATACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAatat < 1:1960616/91‑1 (MQ=255) aCTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAatat > 2:1334525/1‑91 (MQ=255) aCTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAatat < 1:3627858/91‑1 (MQ=255) cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATAtt < 1:1476666/91‑1 (MQ=255) cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATAtt > 1:533920/1‑91 (MQ=255) cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATAtt > 2:116449/1‑91 (MQ=255) cAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTaa < 2:888261/91‑1 (MQ=255) acTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACg < 2:3662601/91‑1 (MQ=255) ccGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAACTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGAtt > 1:3419395/1‑91 (MQ=255) cGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTa < 1:135009/91‑1 (MQ=255) gTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAAGCAATATAATAATATTTAATACGATTa < 1:2090017/91‑1 (MQ=255) tttGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGt < 1:2897317/91‑1 (MQ=255) | TTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGT > USA300TCH1516_ALE/1040307‑1040487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |