| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1040370 | 198 (0.970) | 9 (0.050) | 7/132 | NT | 5.3% | intergenic (+31/+57) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1040397 | 161 (0.960) | intergenic (+58/+30) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
Only 100 of 380 total aligned reads displayed.
GCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGC > USA300TCH1516_ALE/1040280‑1040460 | gCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAA > 1:1050984‑M1/1‑91 (MQ=255) aaaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATg < 1:929219/91‑1 (MQ=255) aaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATgg > 1:2628591/1‑91 (MQ=255) aTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATggg < 2:3204610/91‑1 (MQ=255) tCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAACTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGa > 2:3667397/1‑91 (MQ=255) cAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGaa > 1:2838919/1‑91 (MQ=255) aaTGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGaaa > 2:1793485/1‑91 (MQ=255) aaTGTGACGAAATAATAGATTCAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGaaa < 1:1263594/91‑1 (MQ=255) aTGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAAt < 1:850901/91‑1 (MQ=255) tgtgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATg > 1:1533877/1‑91 (MQ=255) gtgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTGTGTGATATTCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGt < 1:3158904/91‑1 (MQ=255) gtgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGt < 2:1280955/91‑1 (MQ=255) tgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGtt < 2:2570301/91‑1 (MQ=255) gACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTg > 2:923446/1‑91 (MQ=255) cGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGAc < 1:340650/91‑1 (MQ=255) gAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACt > 2:1553378/1‑91 (MQ=255) aataatAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTc > 2:472805/1‑91 (MQ=255) taataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCaa < 1:3216204/91‑1 (MQ=255) taataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCaa < 2:1211856/91‑1 (MQ=255) taataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCaa < 1:780604/91‑1 (MQ=255) gATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTc > 1:3475357/1‑91 (MQ=255) aTTTAGAACAGTATAGAAAAGTGGCATCTATGTGATATCCAAAAGATAATATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTcc < 2:2998545/91‑1 (MQ=255) ttAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGt < 1:2462609/91‑1 (MQ=255) tAGAACAGTATAGAAACGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTt > 2:3778698‑M2/1‑90 (MQ=255) tAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTt > 2:2863207‑M2/1‑90 (MQ=255) ctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGttt > 1:3763656‑M1/49‑91 (MQ=255) ctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGttt > 1:2013500‑M1/49‑91 (MQ=255) aGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAacggagtgttgaagtcaacatttcccatt < 1:1232689‑M1/91‑30 (MQ=255) aGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTtt > 1:2317626‑M2/1‑89 (MQ=255) gAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAacggagtgttgaagtcaacatttcccattg < 1:2747952‑M1/91‑31 (MQ=255) gAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttg > 1:582853‑M2/1‑88 (MQ=255) aaCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttga < 2:2293943‑M2/91‑5 (MQ=255) aCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgat < 1:3517220‑M2/91‑6 (MQ=255) aGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattg < 2:2068915‑M2/91‑8 (MQ=255) aGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattg > 1:2762315‑M2/1‑84 (MQ=255) tcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGc > 1:1120394‑M1/42‑91 (MQ=255) agtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCtt > 2:1665649‑M1/40‑91 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAacggagtgttgaagtcaacatttcccattgattggctttt < 2:2377134‑M1/91‑41 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattggctttt > 2:2493966‑M2/1‑78 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattggctttt > 1:570176‑M2/1‑78 (MQ=255) aaaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat < 1:3396953/91‑1 (MQ=255) aaaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat < 2:2280382/91‑1 (MQ=255) aaaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat < 1:3850196/91‑1 (MQ=255) gTAGCATCTATGTGATATCCAAGAGATAAAATTAAAAGCCAATCAATGGGTAATGTGGACTTCAACACTCCGTTTGATTGGCTTTTATACt > 1:187731/1‑91 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg > 1:210992/1‑91 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg > 1:621499/1‑91 (MQ=255) cATCTATGTGATATACAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTgtgt > 2:3921226/1‑91 (MQ=255) tCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTa < 1:2699582/91‑1 (MQ=255) cTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTAc < 1:1962594/91‑1 (MQ=255) tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt < 2:135830/91‑1 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa > 2:1683702/1‑91 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa < 1:2946451/91‑1 (MQ=255) gtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAg < 2:514953/91‑1 (MQ=255) tgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGt > 1:1946101/1‑91 (MQ=255) tgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGt > 1:2201051/1‑91 (MQ=255) gATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGCAATGTTGACTTCACCACTCCGTTTGATAGGCTTTTATACTGTGTTACTAAGtt > 1:3681989/1‑91 (MQ=255) atatCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTa < 2:2153066/91‑1 (MQ=255) tatCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTAt > 1:3799866/1‑91 (MQ=255) cAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGaaa < 1:3734588/91‑1 (MQ=255) aaaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAg > 1:1422397/1‑91 (MQ=255) aaaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAg > 1:2163795/1‑91 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 1:876914/91‑1 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 1:1606891/91‑1 (MQ=255) aGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaa > 1:1804066/1‑91 (MQ=255) gATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaac < 1:2388139/91‑1 (MQ=255) aTAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaaca < 2:1499017/91‑1 (MQ=255) aTAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaaca < 2:1829097/91‑1 (MQ=255) aaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg > 2:1810060/1‑91 (MQ=255) aaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg > 2:643891/1‑91 (MQ=255) tAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTttgattggcttttaattttatcttttggatatcacatagatgctactttt < 2:2075868‑M2/91‑51 (MQ=255) TAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACAGCaa > 2:1085990‑M1/1‑91 (MQ=255) aaaaGCCAATCAAacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttc > 1:450013‑M1/1‑13 (MQ=255) aaaGCCAATCAAacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttct > 1:110777‑M1/1‑12 (MQ=255) aaGCCAATCAAacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttcta > 2:2969423‑M1/1‑11 (MQ=255) AAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACt > 2:2423282‑M1/1‑91 (MQ=255) aGCCAATCAAacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttctat < 2:810282‑M1/91‑82 (MQ=255) AGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTg > 1:2233195‑M1/1‑91 (MQ=255) GCCAATGAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGa < 1:3069569‑M1/91‑1 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa > 2:2444256‑M1/1‑91 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa < 1:2289695‑M1/91‑1 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa < 1:3902073‑M1/91‑1 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa > 1:3944774‑M1/1‑91 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTCTTATACTGTGTTACTAAGTTATGAAAGTAGCAACTGCTAActgta < 2:3476893‑M1/91‑3 (MQ=255) cAATCAAacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttctatact > 2:352110‑M1/1‑7 (MQ=255) cAATCAAacggagtgttgaagtcaacatttcccattgattggcttttaattttatctcttggatatcacatagatgctacttttctatact > 2:1936432‑M1/1‑7 (MQ=255) CAAGCAATGGGAAATGTTGACTTCAACACACCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaa > 2:2659979‑M1/1‑91 (MQ=255) AATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTAaaaa > 2:1135239‑M1/1‑91 (MQ=255) atcaatGGGAAATGTTGACTTCAACACTCCGTttgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgt < 1:3594680‑M2/91‑60 (MQ=255) aTCAAacggagtgtcgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgt > 2:176497‑M1/1‑5 (MQ=255) ATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaa < 2:1476666‑M1/91‑1 (MQ=255) tCAAacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgtt > 2:2724361‑M1/1‑4 (MQ=255) caatGGGAAATGTTGACTTCAACACTCCGTttgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgttc < 1:902199‑M2/91‑62 (MQ=255) cAAacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgttc < 1:3638896‑M1/91‑89 (MQ=255) aaacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgttct > 2:3412385‑M1/1‑2 (MQ=255) AATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAg < 1:1714856‑M1/91‑1 (MQ=255) AATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAg < 1:2342379‑M1/91‑1 (MQ=255) AATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAg < 1:3611528‑M1/91‑1 (MQ=255) aacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgttcta < 2:1037949‑M1/91‑91 (MQ=255) aacggagtgttgaagtcaacatttcccattgattggcttttaattttatcttttggatatcacatagatgctacttttctatactgttcta > 1:3175268‑M1/1‑1 (MQ=255) ATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGc > 1:3549881‑M1/1‑91 (MQ=255) | GCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGC > USA300TCH1516_ALE/1040280‑1040460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |