| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1084754 = | 153 (0.750) | 13 (0.070) | 6/140 | NT | 8.1% | intergenic (+126/+139) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC |
| ? | USA300TCH1516_ALE | 1084817 = | 161 (0.900) | intergenic (+189/+76) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC | |||||
ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1084853‑1084754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGAC > USA300TCH1516_ALE/1084817‑1084906 ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 1:802558/91‑1ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 2:3049766/91‑1 TTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCC < 1:538552/91‑1 TTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCC < 1:3086195/91‑1 TTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCC > 1:3221724/1‑91 TTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCC > 2:3547666/1‑91 TGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCT < 1:3910906/91‑1 GTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTC > 1:3771140/1‑91 TATAGAAAAAGAAGTCCATTTATTCCATACTAAACAGAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT < 2:545947/91‑1 TATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT < 2:65346/91‑1 TATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT < 1:2599450/91‑1 TATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT < 1:2409276/91‑1 TATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT < 1:1818689/91‑1 ATAGAAAAAGAAACCCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT < 2:3394539/91‑1 ATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT > 2:2563391/1‑91 ATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT < 1:2225240/91‑1 ATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT > 2:2563447/1‑91 TAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTT > 2:2036438/1‑91 TAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTT < 1:2260033/91‑1 TAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTT < 1:2260678/91‑1 TAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCAGCCAAACATGTTGTGGCGCCTCTTT < 2:1397864/91‑1 AGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTT > 2:1891493/1‑91 AGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTT < 1:272483/91‑1 AGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTT < 1:2684544/91‑1 GAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTG > 1:866962/1‑91 GAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTG > 1:866844/1‑91 AAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT < 1:2910818/91‑1 AAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTT > 1:3010870/1‑91 AAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTT > 1:1678757/1‑91 ACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTT > 2:2020975/1‑91 ACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTT > 2:2020727/1‑91 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACA > 1:3218240/1‑91 AACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCT > 2:2816592/1‑91 AACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCT > 1:1670740/1‑91 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTA > 1:3136907/1‑91 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTA > 2:428759/1‑91 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTA > 1:2907505/1‑91 CATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAA > 1:5158/1‑91 CATGTTATTTTGTTCATCCAAACATGTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAA > 1:1700782/1‑91 CATGTTATTTTGTTCATCCAAACATGTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAA > 1:1700883/1‑91 CATGTTATTTTGTTCATCCAAACATGTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAA > 1:2011234/1‑91 ATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAT > 1:1602405/1‑91 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC < 2:564170/91‑1 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC > 2:771907/1‑91 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC > 1:1827332/1‑91 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC < 1:1881868/91‑1 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC > 1:3196714/1‑91 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGGATCTATACAATTATGGATAAAATTTAAC < 1:582570/91‑1 CTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACC < 2:2974578/91‑1 CTCTTTTGTTTAGTATGGAATAAATGGTTGTCTTTTTCTATACAATGAATTTCTAATCTAGTAGCTATACAATTATAGATAAAATTTAACC < 2:3960167/91‑1 CTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTA < 2:2190034/91‑1 CTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTA > 1:2200332/1‑91 CTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTA > 1:2200272/1‑91 TTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACA < 1:411410/91‑1 TTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACA < 1:1305583/91‑1 TTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACAC > 1:1617032/1‑91 TTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCAACAC > 1:3287822/1‑91 TGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACG < 1:2531030/91‑1 GTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGA < 2:2431078/91‑1 GTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGA < 1:1867116/91‑1 TTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGAC > 2:1684361/1‑91 TTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGAC < 1:1106482/91‑1 TTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGAC < 1:1020105/91‑1 ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1084853‑1084754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGAC > USA300TCH1516_ALE/1084817‑1084906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |