BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1084754 =	153 (0.750)	13 (0.070)	6/140	NT	8.1%	intergenic (+126/+139)	purD/ykoC_1	Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC
*	?	USA300TCH1516_ALE	1084817 =	161 (0.900)	13 (0.070)	6/140	NT	8.1%	intergenic (+189/+76)	purD/ykoC_1	Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC

Only 100 of 249 total aligned reads displayed.

CCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACC  >  USA300TCH1516_ALE/1084727‑1084907

 cAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGttt                                                                                           >  1:2586280/1‑91 (MQ=255)

    aTTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGt                                                                                        >  1:2231127/1‑91 (MQ=255)

     tttGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTa                                                                                       >  1:773101/1‑91 (MQ=255)

       tatgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg                                                                                     >  2:371207/3‑91 (MQ=255)

       tatgATTACGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg                                                                                     >  2:2757073/3‑91 (MQ=255)

         tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                                                                                   <  1:2199064/91‑1 (MQ=255)

          gATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTCTGGaa                                                                                  >  2:1302857/1‑91 (MQ=255)

           aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt                                                                                 >  2:287351/1‑91 (MQ=255)

           aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt                                                                                 >  2:2522597/1‑91 (MQ=255)

             tATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATaa                                                                               <  2:2116204/91‑1 (MQ=255)

               tGCATATGTAATACAAAAGGGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAAt                                                                             <  2:2399829/91‑1 (MQ=255)

                gCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATg                                                                            <  1:556065/91‑1 (MQ=255)

                gCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATg                                                                            <  1:499505/91‑1 (MQ=255)

                 cATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATgg                                                                           <  2:1195525/91‑1 (MQ=255)

                  atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                                                                          <  1:797492/91‑1 (MQ=255)

                  atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                                                                          <  2:1083682/91‑1 (MQ=255)

                     tGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtttt                                                                       >  2:411410/1‑91 (MQ=255)

                      gTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttc                                                                      <  2:2985942/91‑1 (MQ=255)

                       tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct                                                                     >  2:621348/1‑91 (MQ=255)

                       tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct                                                                     <  1:3244467/91‑1 (MQ=255)

                       tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct                                                                     <  1:2729832/91‑1 (MQ=255)

                       tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTCGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct                                                                     <  1:3333343/91‑1 (MQ=255)

                        aaTACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtgttctt                                                                    >  1:3827970/1‑91 (MQ=255)

                          aACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt                                                                  >  1:3010870‑M1/2‑91 (MQ=255)

                           acaaaagaggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtTTAGTATGGAATAAATGGttttcttttt                                                                 >  2:2020727‑M2/64‑91 (MQ=255)

                            CAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttttc                                                                >  1:866844‑M1/1‑91 (MQ=255)

                             AAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttttct                                                               <  1:2684544‑M1/91‑1 (MQ=255)

                             AAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttttct                                                               >  2:1891493‑M1/1‑91 (MQ=255)

                              AAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCta                                                              <  1:2260678‑M1/91‑1 (MQ=255)

                               AAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat                                                             >  2:2563447‑M1/1‑91 (MQ=255)

                                AGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtata                                                            <  1:2409276‑M1/91‑1 (MQ=255)

                                   GGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa                                                         >  2:3547666‑M1/1‑91 (MQ=255)

                                   GGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa                                                         <  1:538552‑M1/91‑1 (MQ=255)

                                    GCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAt                                                        <  1:802558‑M1/91‑1 (MQ=255)

                                    GCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAt                                                        <  2:3049766‑M1/91‑1 (MQ=255)

                                     cgcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATg                                                       <  1:1091352/91‑1 (MQ=255)

                                      gcCACATCATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGa                                                      >  1:3076919/1‑91 (MQ=255)

                                      gcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGa                                                      >  2:2837852/1‑91 (MQ=255)

                                       ccACAACATGTTTGGATGAACAAAATAACATGTGTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGaa                                                     <  2:2648283/91‑1 (MQ=255)

                                        cacaACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAt                                                    >  2:1614874/1‑91 (MQ=255)

                                        cacaACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAt                                                    >  2:2044621/1‑91 (MQ=255)

                                          caacaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAttt                                                  <  2:1785143/91‑1 (MQ=255)

                                            acaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCt                                                <  2:2803713/91‑1 (MQ=255)

                                            acaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTCAGTATGGAATAAATGGTTTTCTTTTTCTACACAATGAATTTCt                                                >  1:3962992/1‑91 (MQ=255)

                                             caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGACTTTCTa                                               >  2:154797/1‑91 (MQ=255)

                                             caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               <  1:3525726/91‑1 (MQ=255)

                                             caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               <  2:168486/91‑1 (MQ=255)

                                             caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               <  1:1238376/91‑1 (MQ=255)

                                             caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               <  1:1648252/91‑1 (MQ=255)

                                             caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               >  2:3138338/1‑91 (MQ=255)

                                             acatgttattttgttcatccaaacatgttgtggcgcctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               >  1:3136907‑M2/46‑91 (MQ=255)

                                             acatgttattttgttcatccaaacatgttgtggcgcctcttttgtATAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               >  1:2907505‑M2/46‑91 (MQ=255)

                                              catgttattttgttcatccaaacatgttgtggcacctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTaa                                              >  1:2011234‑M2/45‑91 (MQ=255)

                                              catgttattttgttcatccaaacatgttgtggcacctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTaa                                              >  1:1700782‑M2/45‑91 (MQ=255)

                                              aTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTaa                                              <  1:3016338/91‑1 (MQ=255)

                                                gTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAtt                                            >  2:3488672/1‑91 (MQ=255)

                                                 tttGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAttt                                           <  2:317590/91‑1 (MQ=255)

                                                  ttGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTa                                          <  2:3623005/91‑1 (MQ=255)

                                                  ttGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTa                                          <  2:1973337/91‑1 (MQ=255)

                                                      aTGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTAt                                      <  1:2063425/91‑1 (MQ=255)

                                                       tGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTGTTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATc                                     >  2:3376425/1‑91 (MQ=255)

                                                       tGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATc                                     >  1:3396952/1‑91 (MQ=255)

                                                       tGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATc                                     >  2:630320/1‑91 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                                   <  2:1407946/91‑1 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                                   <  1:299498/91‑1 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                                   <  2:2176319/91‑1 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                                   >  1:2509134/1‑91 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                                   <  1:2317439/91‑1 (MQ=255)

                                                          aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                                  <  1:3740202/91‑1 (MQ=255)

                                                          aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                                  >  1:1747379/1‑91 (MQ=255)

                                                          aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                                  >  1:1670792/1‑91 (MQ=255)

                                                          aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                                  >  2:483918/1‑91 (MQ=255)

                                                           cAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtata                                 >  1:580051/1‑91 (MQ=255)

                                                             aaaTAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACa                               >  2:3412511/1‑91 (MQ=255)

                                                             aaaTAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACa                               <  1:1499353/91‑1 (MQ=255)

                                                                tAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAAtt                            >  1:921944/1‑91 (MQ=255)

                                                                 aaCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTa                           >  1:1038825/1‑91 (MQ=255)

                                                                  aCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAAttct                          >  2:812331/1‑89 (MQ=255)

                                                                  aCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTAt                          >  2:1055176/1‑91 (MQ=255)

                                                                    aTGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATgg                        <  2:2298324/91‑1 (MQ=255)

                                                                     tgtttgttGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGa                       <  1:1582435/91‑1 (MQ=255)

                                                                       tttGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATa                     >  2:422787/1‑91 (MQ=255)

                                                                        ttGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaa                    <  1:1704988/91‑1 (MQ=255)

                                                                         tgtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaa                   >  1:1340693/1‑91 (MQ=255)

                                                                          gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa                  <  1:3268583/91‑1 (MQ=255)

                                                                          gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa                  >  1:2860707/1‑91 (MQ=255)

                                                                          gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa                  >  2:754895/1‑91 (MQ=255)

                                                                          gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa                  <  2:1518446/91‑1 (MQ=255)

                                                                          gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa                  >  2:3787873/1‑91 (MQ=255)

                                                                           tgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAt                 <  1:126714/91‑1 (MQ=255)

                                                                           tgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAt                 <  2:1865005/91‑1 (MQ=255)

                                                                           tgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAt                 <  1:132976/91‑1 (MQ=255)

                                                                             gCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAttt               >  2:3844949/1‑91 (MQ=255)

                                                                                cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAc            >  1:3196714‑M2/11‑91 (MQ=255)

                                                                                cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAc            <  2:564170‑M2/81‑1 (MQ=255)

                                                                                cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAc            >  1:1827332‑M2/11‑91 (MQ=255)

                                                                                   cttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTa         <  2:2190034‑M2/84‑1 (MQ=255)

                                                                                   cttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTa         >  1:2200332‑M2/8‑91 (MQ=255)

                                                                                         tTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGAc   <  1:1020105‑M2/90‑1 (MQ=255)

                                                                                          ttAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATGATGGATAAAATTTAACCTACACGAcc  <  2:2243572/91‑1 (MQ=255)

CCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACC  >  USA300TCH1516_ALE/1084727‑1084907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.