| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1084763 | 158 (0.780) | 10 (0.060) | 7/140 | NT | 6.3% | intergenic (+135/+130) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC |
| ? | USA300TCH1516_ALE | = 1084806 | 161 (0.900) | intergenic (+178/+87) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC | |||||
TCTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1084664‑1084763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaagaggTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAATC < USA300TCH1516_ALE/1084806‑1084717 TCTATAACGATAGATTTTTTCATAGC‑TTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAAATTGTGATTATGCATATGTAATAC > 2:902719/1‑91 CTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATAC < 1:1891629/91‑1 CTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATAC < 2:430740/91‑1 CTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATAC < 1:468879/91‑1 CTATAACGATACATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATAC < 1:3586693/91‑1 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA < 2:2828583/91‑1 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA < 2:2828866/91‑1 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA < 2:624369/91‑1 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA < 1:653647/91‑1 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA > 2:2888467/1‑91 ATAACGATAGATTTTTTTTTAGCTTTTTTAGTTGTAGAGCCTAGGACATTGCTTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA > 2:1285101/1‑91 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA > 1:1605051/1‑91 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA < 1:3030192/91‑1 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA < 2:710197/91‑1 TAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTTTAGGACATTGATTTCTGTACCAAATTTGTGGTTATGCATATGTAATACAAA > 1:3718625/1‑91 TAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAA > 2:1287842/1‑91 TAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAA > 2:1474931/1‑91 TAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAA > 2:3740202/1‑91 AACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAA < 1:3658296/91‑1 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACGTTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG < 1:2666160/91‑1 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG > 1:580899/1‑91 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG > 1:1054746/1‑91 ACGATAGATTTTTTCATAGC‑TTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGA > 1:3857500/1‑91 GATAGATTTTTTCATAGCTTTTTTAGTTGCAGAGTCTAGGACCTTGTTTTCTGTAAACAATTTGTGATTATGCATATGTAATACAACAGAG > 2:1389865/1‑91 ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG < 2:1446906/91‑1 GAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCAC‑AACATGTTATTTTGTTCATCCAAA < 1:1272205/91‑1 AGTCTAGGATATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAA < 1:3779447/91‑1 AGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAAACATGTTATTTTGTTCATCCAAA < 1:1565423/91‑1 AGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAAACATGTTATTTTGTTCATCCAAA < 2:1249810/91‑1 TCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAAACATGTTATTTTGTTCATCCAAACA < 1:3567983/91‑1 AGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGT < 2:1920494/91‑1 GGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTT < 1:2016482/91‑1 GACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTG < 2:1405777/91‑1 CATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTG < 2:2444402/91‑1 TCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT < 1:2150688/91‑1 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACGAATTTGGTA > 2:2411704/1‑91 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA < 1:2126153/91‑1 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA > 2:3864666/1‑91 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA < 2:1615913/91‑1 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA < 2:1615820/91‑1 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA < 2:131196/91‑1 AAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAG > 2:1597838/1‑91 AAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAG > 2:1597675/1‑91 AAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAG > 1:2897647/1‑91 GAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAA < 2:2963554/91‑1 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA > 2:3899328/1‑91 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA < 2:1352212/91‑1 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT < 2:2569962/91‑1 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT < 2:2145380/91‑1 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT < 2:2145297/91‑1 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT > 2:1272126/1‑91 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT > 1:1379453/1‑91 GTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAATC > 1:2456007/1‑91 TCTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1084664‑1084763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaagaggTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAATC < USA300TCH1516_ALE/1084806‑1084717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |