BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1084763	158 (0.780)	10 (0.060)	7/140	NT	6.3%	intergenic (+135/+130)	purD/ykoC_1	Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC
*	?	USA300TCH1516_ALE	= 1084806	161 (0.900)	10 (0.060)	7/140	NT	6.3%	intergenic (+178/+87)	purD/ykoC_1	Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC

Only 100 of 243 total aligned reads displayed.

GATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAA  >  USA300TCH1516_ALE/1084717‑1084896

   ttCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctc                                                                                        <  2:2963554‑M2/91‑5 (MQ=255)

     cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctt                                                                                      >  1:2897647‑M2/1‑85 (MQ=255)

     cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctt                                                                                      >  2:1597838‑M2/1‑85 (MQ=255)

      tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt                                                                                     <  2:1615820‑M2/91‑8 (MQ=255)

        tACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttg                                                                                   >  2:3864666‑M2/1‑82 (MQ=255)

         aaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGt                                                                                  >  2:2020975‑M1/29‑91 (MQ=255)

          ccAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGtt                                                                                 <  1:2588380/91‑1 (MQ=255)

           cAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGttt                                                                                <  1:377660/91‑1 (MQ=255)

             aaTTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAg                                                                              >  2:2131001/1‑91 (MQ=255)

              aTTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGt                                                                             >  1:2231127/1‑91 (MQ=255)

               tttGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTa                                                                            <  1:2095723/91‑1 (MQ=255)

                 tgtgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg                                                                          >  1:3558832/1‑91 (MQ=255)

                 tgtgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg                                                                          <  1:1122309/91‑1 (MQ=255)

                 tatgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg                                                                          >  2:1316577/3‑91 (MQ=255)

                    gATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGaa                                                                       <  1:842317/91‑1 (MQ=255)

                     aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt                                                                      >  1:552139/1‑91 (MQ=255)

                     aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt                                                                      >  2:2522597/1‑91 (MQ=255)

                      ttATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATa                                                                     <  2:2791205/91‑1 (MQ=255)

                         tGCATATGTAATACAAAAGGGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAAt                                                                  <  2:2399829/91‑1 (MQ=255)

                          gCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATg                                                                 <  1:556065/91‑1 (MQ=255)

                             tatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                                                              >  2:2721296/1‑91 (MQ=255)

                             tatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                                                              <  1:1534226/91‑1 (MQ=255)

                               tGTCATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtttt                                                            <  1:3065511/91‑1 (MQ=255)

                                 tAATACAAAGGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct                                                          <  2:2288883/91‑1 (MQ=255)

                                 tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct                                                          <  1:2729832/91‑1 (MQ=255)

                                 tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct                                                          <  1:3244467/91‑1 (MQ=255)

                                   aTACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttt                                                        >  1:1302472/1‑91 (MQ=255)

                                    aACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt                                                       >  1:3010870‑M1/2‑91 (MQ=255)

                                      CAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttttc                                                     >  1:866962‑M1/1‑91 (MQ=255)

                                       AAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttttct                                                    >  2:1891493‑M1/1‑91 (MQ=255)

                                       AAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttttct                                                    <  1:2684544‑M1/91‑1 (MQ=255)

                                        AAAGAGGCGCCACAACATGTTTGGCTGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCta                                                   <  2:1397864‑M1/91‑1 (MQ=255)

                                         AAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat                                                  >  2:2563391‑M1/1‑91 (MQ=255)

                                         AAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGGTTTCTTTTTCtat                                                  <  2:3394539‑M1/91‑1 (MQ=255)

                                          agagGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgtattacatatgcataatcacaaatttggtacaga                                                 <  1:2150688‑M2/91‑44 (MQ=255)

                                            agGCGCCACAACATGTTTGGATGAACAAACCAACATGATCGTGGCCCCCCTTTCGTTTCGTATGGAATCACTGGCTTTCTTTCTCTATACa                                               >  2:1990865/1‑91 (MQ=255)

                                            AGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACa                                               <  1:3910906‑M1/91‑1 (MQ=255)

                                             GGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa                                              <  1:3086195‑M1/91‑1 (MQ=255)

                                                 ccACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGaa                                          <  2:3116381/91‑1 (MQ=255)

                                                 ccACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGaa                                          >  1:33580/1‑91 (MQ=255)

                                                   acaacaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAtt                                        <  2:2571774/91‑1 (MQ=255)

                                                    caacaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAttt                                       <  2:1785143/91‑1 (MQ=255)

                                                    caacaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAttt                                       <  2:217985/91‑1 (MQ=255)

                                                      acaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCt                                     <  1:3468267/91‑1 (MQ=255)

                                                       caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                    <  2:168486/91‑1 (MQ=255)

                                                       caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGATTAGTATGGACTAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                    >  2:155052/1‑91 (MQ=255)

                                                       caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTCTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                    >  2:1032910/1‑91 (MQ=255)

                                                        aTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTaa                                   >  2:688468/1‑91 (MQ=255)

                                                         tGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAt                                  >  1:684601/1‑91 (MQ=255)

                                                          gTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTATAAtt                                 >  2:1482122/1‑91 (MQ=255)

                                                           tttGGATGAACAAAATAACATGTTTGTGGCGcctcttttgtattacatatgcataatcacaaatttggtacagaaatcaatgtcctagact                                <  2:1249810‑M2/91‑61 (MQ=255)

                                                           tttGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAttt                                >  1:778967/1‑91 (MQ=255)

                                                           tttGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAttt                                <  2:317589/91‑1 (MQ=255)

                                                             tGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAg                              <  2:1294657/91‑1 (MQ=255)

                                                             tGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAg                              >  2:3732597/1‑91 (MQ=255)

                                                             tGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAg                              >  1:221417/1‑91 (MQ=255)

                                                               gATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTa                            >  2:1543729/1‑91 (MQ=255)

                                                                 tGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATc                          >  2:629492/1‑91 (MQ=255)

                                                                   aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                        <  1:299498/91‑1 (MQ=255)

                                                                   aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                        >  1:2509097/1‑91 (MQ=255)

                                                                   aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                        <  1:2317439/91‑1 (MQ=255)

                                                                   aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                        <  2:2176066/91‑1 (MQ=255)

                                                                    aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTTTACAATGAATTTCTAATTTAGTATCtat                       >  2:2086953/1‑91 (MQ=255)

                                                                    aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                       <  1:3740202/91‑1 (MQ=255)

                                                                    aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                       >  1:1747379/1‑91 (MQ=255)

                                                                    aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                       >  2:483918/1‑91 (MQ=255)

                                                                    aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                       >  1:1670792/1‑91 (MQ=255)

                                                                      aaaaTAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATAc                     <  1:800047/91‑1 (MQ=255)

                                                                           aaCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTa                >  1:3173210/1‑91 (MQ=255)

                                                                           aaCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTa                <  2:3950343/91‑1 (MQ=255)

                                                                           aaCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTa                >  2:3342385/1‑91 (MQ=255)

                                                                            aCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACATTGCATTTCTAATTTAGTATCTATACATTTAt               >  2:2841617/1‑91 (MQ=255)

                                                                            aCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAAttct               >  2:812331/1‑89 (MQ=255)

                                                                            aCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTAt               >  2:3536830/1‑91 (MQ=255)

                                                                            aCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTCCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTAt               >  2:1055991/1‑91 (MQ=255)

                                                                             cATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATg              <  2:110882/91‑1 (MQ=255)

                                                                              aTGTTTGTGGCACCTCTTTTGTTTCGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATgg             <  2:3673619/91‑1 (MQ=255)

                                                                              aTGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATgg             <  2:2298908/91‑1 (MQ=255)

                                                                               tgtttgttGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGa            <  1:1582435/91‑1 (MQ=255)

                                                                               tGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGa            <  2:583898/91‑1 (MQ=255)

                                                                                gTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGAt           >  1:1400503/1‑91 (MQ=255)

                                                                                gTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTGCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGAt           <  2:3472656/91‑1 (MQ=255)

                                                                                 tttGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATa          <  2:2808017/91‑1 (MQ=255)

                                                                                 tttGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATa          >  2:422787/1‑91 (MQ=255)

                                                                                 tttGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATa          <  1:2268650/91‑1 (MQ=255)

                                                                                   tgtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaa        >  1:1340693/1‑91 (MQ=255)

                                                                                    gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa       <  1:1020588/91‑1 (MQ=255)

                                                                                    gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa       >  2:3787987/1‑91 (MQ=255)

                                                                                    gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa       <  1:2056218/91‑1 (MQ=255)

                                                                                    gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa       >  1:2860707/1‑91 (MQ=255)

                                                                                    gtgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATaaaa       <  1:3268583/91‑1 (MQ=255)

                                                                                     tgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTTTTTTTTATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAt      >  2:3550967/1‑91 (MQ=255)

                                                                                     tgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAt      <  2:1865005/91‑1 (MQ=255)

                                                                                     tgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAt      <  1:126714/91‑1 (MQ=255)

                                                                                      ggCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAtt     >  1:1087182/1‑91 (MQ=255)

                                                                                       gCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAttt    >  1:1705983/1‑91 (MQ=255)

                                                                                       gCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAttt    >  1:46910/1‑91 (MQ=255)

                                                                                       gCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAttt    <  2:1951219/91‑1 (MQ=255)

                                                                                        cACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTa   <  1:2451762/91‑1 (MQ=255)

                                                                                         aCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATTTATTTAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTaa  >  2:3028424/1‑91 (MQ=255)

GATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAA  >  USA300TCH1516_ALE/1084717‑1084896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.