| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1084763 | 158 (0.780) | 10 (0.060) | 7/140 | NT | 6.3% | intergenic (+135/+130) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC |
| ? | USA300TCH1516_ALE | = 1084806 | 161 (0.900) | intergenic (+178/+87) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC | |||||
Only 100 of 260 total aligned reads displayed.
ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAT > USA300TCH1516_ALE/1084673‑1084853 | gttaaattttatccataattgtatagatactaaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAgg > 2:771907‑M1/82‑91 (MQ=255)gttaaattttatccataattgtatagatactaaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAgg > 1:3196714‑M1/82‑91 (MQ=255)gttaaattttatccataattgtatagatactaaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAgg > 1:1827332‑M1/82‑91 (MQ=255)aTAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG < 2:1446906‑M1/91‑1 (MQ=255) aTTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGcc > 1:2315982/1‑91 (MQ=255) tttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac > 1:1545587/1‑91 (MQ=255) tttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac > 2:1657064/1‑91 (MQ=255) tttttCACAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac < 1:1964344/91‑1 (MQ=255) tttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaa < 1:1236346/91‑1 (MQ=255) tttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaa < 2:2742706/91‑1 (MQ=255) ttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaac > 2:1804073/1‑91 (MQ=255) tCATAGCTTTTGTAGTTGTGGAGTTTATGATATTGATTGCTGTACCATATTTGGGATTATGCATATGTATTACAAAAGAGGCGCCacaaga < 2:511835/91‑3 (MQ=255) cATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACAt < 2:863080/91‑1 (MQ=255) aGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGtt > 1:872610/1‑91 (MQ=255) aGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGtt < 2:1944799/91‑1 (MQ=255) aGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGtt > 1:295649/1‑91 (MQ=255) gCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGttt > 1:3906908/1‑91 (MQ=255) ttttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTgg > 2:2838216/1‑91 (MQ=255) ttttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTgg < 1:2555131/91‑1 (MQ=255) ttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGAt < 2:3957004/91‑1 (MQ=255) ttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGAt < 2:2083567/91‑1 (MQ=255) tttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATg > 2:238094/1‑91 (MQ=255) ttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGa < 2:3581648/91‑1 (MQ=255) ttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGa < 1:662936/91‑1 (MQ=255) ttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGa < 1:164369/91‑1 (MQ=255) tAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGgaagaa < 2:601396/91‑1 (MQ=255) tAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGaa > 1:1978961/1‑91 (MQ=255) gTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACa < 1:1338551/91‑1 (MQ=255) ttGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaa > 1:398162/1‑91 (MQ=255) tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa < 2:3447148/91‑1 (MQ=255) tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa > 2:256149/1‑91 (MQ=255) tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa > 2:1396757/1‑91 (MQ=255) tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa > 1:1490236/1‑91 (MQ=255) agTCTAGGATATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaa < 1:3779447‑M1/91‑32 (MQ=255) agTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGcgccacaaacatgttattttgttcatccaaa < 1:1565423‑M1/91‑32 (MQ=255) agTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAAc < 2:3079806/91‑1 (MQ=255) gTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACa > 1:2643006/1‑91 (MQ=255) tCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGcgccacaaacatgttattttgttcatccaaaca < 1:3567983‑M1/91‑34 (MQ=255) tCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACAt > 2:2510225/1‑91 (MQ=255) attagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACAt > 1:1602405‑M1/49‑91 (MQ=255) cTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATg < 2:3381987/91‑1 (MQ=255) cTAGGACATTGATTTCTGTACCAAATGTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATg < 2:1089440/91‑1 (MQ=255) tagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGt > 1:3136907‑M1/47‑91 (MQ=255) tAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGt < 2:2229201/91‑1 (MQ=255) tAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGt < 2:2587161/91‑1 (MQ=255) aGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgt < 2:1920494‑M1/91‑37 (MQ=255) aGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGtt > 1:3747263/1‑91 (MQ=255) ggACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGttt > 2:1509773/1‑91 (MQ=255) ggACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGttt > 1:1065342/1‑91 (MQ=255) cATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgtg > 2:3661095/1‑91 (MQ=255) cATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgtg < 1:3659729/91‑1 (MQ=255) cATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgtg < 2:2171944/91‑1 (MQ=255) gATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAc > 1:2456007‑M2/1‑90 (MQ=255) aTTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcc > 1:1379453‑M2/1‑89 (MQ=255) tCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctct < 1:2150688‑M1/91‑49 (MQ=255) cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctt > 2:1597675‑M2/1‑85 (MQ=255) cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctt > 2:1597838‑M2/1‑85 (MQ=255) tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt < 2:1615820‑M2/91‑8 (MQ=255) aaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGt > 2:2020727‑M1/29‑91 (MQ=255) cAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGttt < 2:2741835/91‑1 (MQ=255) cAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGttt > 1:2586280/1‑91 (MQ=255) aaaTTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTa > 2:2908912/1‑91 (MQ=255) aaTTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAg > 2:2131001/1‑91 (MQ=255) tttGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTa > 1:773101/1‑91 (MQ=255) tttGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTa < 1:2095723/91‑1 (MQ=255) tatgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg > 2:1316577/3‑91 (MQ=255) aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt > 2:2522597/1‑91 (MQ=255) aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt > 1:552139/1‑91 (MQ=255) ttATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATa < 2:2791205/91‑1 (MQ=255) gCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATg < 1:499505/91‑1 (MQ=255) gCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATg < 1:556065/91‑1 (MQ=255) cATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATgg < 2:1195525/91‑1 (MQ=255) atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt < 1:1735640/91‑1 (MQ=255) tGTCATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtttt < 1:3065511/91‑1 (MQ=255) tGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtttt > 2:411410/1‑91 (MQ=255) gTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttc < 2:2985942/91‑1 (MQ=255) tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct < 1:2729832/91‑1 (MQ=255) tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct < 1:3244467/91‑1 (MQ=255) tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTCGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct < 1:3333343/91‑1 (MQ=255) aaTACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtgttctt > 1:3827970/1‑91 (MQ=255) aACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt > 1:1678757‑M1/2‑91 (MQ=255) ACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttttt < 1:2910818‑M1/91‑1 (MQ=255) cAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacgaatttggta > 2:2411704‑M1/1‑9 (MQ=255) cAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggta < 1:2126153‑M1/91‑83 (MQ=255) cAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggta > 2:3864666‑M1/1‑9 (MQ=255) CAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttttc > 1:866844‑M1/1‑91 (MQ=255) aaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtaca < 2:131196‑M1/91‑85 (MQ=255) AAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCta < 1:2260033‑M1/91‑1 (MQ=255) aaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacag > 1:2897647‑M1/1‑6 (MQ=255) AAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat < 1:2225240‑M1/91‑1 (MQ=255) AGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtata < 1:2409276‑M1/91‑1 (MQ=255) AGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtata < 2:65346‑M1/91‑1 (MQ=255) AGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTCTGTTTAGTATGGAATAAATGGACTTCTTTTTCtata < 2:545947‑M1/91‑1 (MQ=255) agGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaa > 2:3899328‑M1/1‑3 (MQ=255) ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat < 2:2569962‑M1/91‑90 (MQ=255) ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat > 2:1272126‑M1/1‑2 (MQ=255) ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat < 2:2145380‑M1/91‑90 (MQ=255) GGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa > 2:3547666‑M1/1‑91 (MQ=255) GCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAt < 2:3049766‑M1/91‑1 (MQ=255) GCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAt < 1:802558‑M1/91‑1 (MQ=255) | ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAT > USA300TCH1516_ALE/1084673‑1084853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |